PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 493092
Common NameARALYDRAFT_493092
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 205aa    MW: 22203.4 Da    PI: 4.849
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
493092genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.5e-054668123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             y+C+ C + F++   L  H+++H
   493092 46 YTCNFCRREFRSAQALGGHMNVH 68
             9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.27E-64372No hitNo description
Gene3DG3DSA:3.30.160.609.1E-44470IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00734668IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-54669IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1984673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MNGGAWMWNP NKIEELEDDD DSWEVKAFEQ DTKGNISGTT WPPRSYTCNF CRREFRSAQA  60
LGGHMNVHRR DRASSRAHQG STVAAAARSG HGGTLLNSCA PPLPTTTLII QSTTSNIEGL  120
SHFYQLQNPS GIFGNSGDMV NLYGTTSFPS SNLPFSVLNS PVEAPPRLIE YSTGDDESIG  180
SMKETTGTSV DELDLELRLG HNPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-134168229superman protein
2l1o_A2e-134168229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap493092
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615470.0AL161547.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47.
GenBankBT0108280.0BT010828.1 Arabidopsis thaliana At4g17810 mRNA, complete cds.
GenBankBT0113010.0BT011301.1 Arabidopsis thaliana At4g17810 gene, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankHM4533340.0HM453334.1 Arabidopsis lyrata palmate-like pentafoliata 1 transcription factor (PALM1) gene, complete cds.
GenBankZ973440.0Z97344.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870083.11e-152transcriptional regulator SUPERMAN
TrEMBLD7MDE21e-151D7MDE2_ARALL; Nucleic acid binding protein
STRINGfgenesh2_kg.7__2525__AT4G17810.11e-151(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-150C2H2 family protein