PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 493095
Common NameARALYDRAFT_493095
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 362aa    MW: 40068.9 Da    PI: 5.6546
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
493095genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.5e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd++l  ++++ G g+W++ ++  g++R++k+c++rw +yl
           493095 15 KGPWLQEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYL 62
                     79********************************************97 PP
2Myb_DNA-binding49.69e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + eE+  +v+++++lG++ W++Ia +++ gRt++++k++w++++
           493095  68 RGKISDEEESTIVRLHALLGNK-WSKIACHLP-GRTDNEIKNYWNTHM 113
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7411062IPR017930Myb domain
SuperFamilySSF466898.2E-2812109IPR009057Homeodomain-like
SMARTSM007171.6E-111464IPR001005SANT/Myb domain
PfamPF002491.4E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-221669IPR009057Homeodomain-like
CDDcd001672.02E-91762No hitNo description
PROSITE profilePS5129425.63863117IPR017930Myb domain
SMARTSM007177.0E-1467115IPR001005SANT/Myb domain
PfamPF002495.8E-1468112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2570117IPR009057Homeodomain-like
CDDcd001678.44E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGRSPCCDQD KGVKKGPWLQ EEDDKLTAYI NENGYGNWRS LPKLAGLNRC GKSCRLRWMN  60
YLRPDIRRGK ISDEEESTIV RLHALLGNKW SKIACHLPGR TDNEIKNYWN THMRKKLLQM  120
GIDPMTHEPR TNDLSPILDV SQMLAAAINN GQFGNNNLFN NNTALKDLLK LQLIHKMLQI  180
ITPKAIPNIN SFNASSVNPK PEPVVNSFNT NSVNPKPNPP VGLFINQSGI APDATSDFIP  240
SYENVWDGFE DNQLPGLVTV SQDSLNTAKP GTSTTTEVND HTRTGMIPGY YGDQLLEIPS  300
SGSISVSPET TSLNHPGTAQ QSSGSSDLLE DWEKFLDDET SDSCWKSFLD LTSPTSSPVP  360
W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-25151174105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-25151174105C-Myb DNA-Binding Domain
1msf_C3e-25151174105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00438DAPTransfer from AT4G17785Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap493095
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1187280.0AK118728.1 Arabidopsis thaliana At4g17780 mRNA for putative MYB transcription factor, complete cds, clone: RAFL21-07-A19.
GenBankBT0056420.0BT005642.1 Arabidopsis thaliana clone U51012 putative MYB transcription factor (At4g17785) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872424.10.0transcription factor MYB39
SwissprotQ8GWP00.0MYB39_ARATH; Transcription factor MYB39
TrEMBLD7MDE60.0D7MDE6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__2528__AT4G17785.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122431730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.10.0myb domain protein 39