PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 493108
Common NameARALYDRAFT_493108
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 324aa    MW: 37082.9 Da    PI: 8.1652
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
493108genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-31165218255
  G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+
   493108 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 218
              9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.02E-15162219IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27163219IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-23165219IPR006447Myb domain, plants
PfamPF002499.8E-7166217IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MELFPSQPDL YLKISQRREE EQEKENQELQ EQEVERRLGF QSKASDSDRK SSDNLIHTHQ  60
FTSNNEATKI NNNQEHKESR DQDLRSMLMM RPIRGIPLYQ NQVLDHYYYS STSPTPFFFS  120
EVNGQHASSR LITNPNCSFN IHHRNRRQAQ PQPPRFTAKR GVRAPRMRWT TTLHAHFVHA  180
VQLLGGHERA TPKSVLELMD VQDLTLAHVK SHLQMYRTIK STEKPTTSSG HSDTCENGSQ  240
VNSERESRNL QGLWNNSSSE ARFHLKAKAS SAVDISSNEN EWKNQRCPSN ERLSSDSSSL  300
TGTRPETETP NLDFTLATPN LSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-16166220458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-16166220458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-16166220357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-16166220357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-16166220357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-16166220357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-16166220458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-16166220458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-16166220458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-16166220458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-16166220458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-16166220458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap493108
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0486900.0AY048690.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI3 (KAN3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872104.10.0probable transcription factor KAN3
SwissprotQ941I20.0KAN3_ARATH; Probable transcription factor KAN3
TrEMBLD7M9G70.0D7M9G7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__2541__AT4G17695.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139841825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-173G2-like family protein