PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 493153
Common NameARALYDRAFT_493153
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 289aa    MW: 32452.2 Da    PI: 6.5986
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
493153genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS338.31.4e-103228831319
    GRAS  31 aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa 133
             +s +g+p+qRl +y++e+L+arl +s+s++ykal+++e +     e ++++++++e++P+ kf++ taN aIlea++ge+rvHiiDf+i qG Q++ L+q+La
  493153   2 VSVSGSPIQRLGTYMAEGLRARLEGSGSNIYKALKCNEPT---GRELMSYMSVLYEICPYWKFAYTTANAAILEAIAGETRVHIIDFQIAQGSQYMFLIQELA 101
             7899***********************************9...9999999***************************************************** PP

    GRAS 134 sRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl 234
             +Rp+gpp lR+Tgv++++s+  +   l+ +gerLak+A+++gvpfef+  +  +  +++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+ksl
  493153 102 KRPGGPPFLRVTGVDDSQSTyaRGGGLSLVGERLAKLAQSCGVPFEFHD-AIMSGCKVQREHLGVEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSL 203
             ****************999999999************************.7888999********************************************** PP

    GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319
             sPk+v++veqe+++n+++Fl rf+e+l+yy+a+f+s+++  pr++++ri+ E+++++r+ivn++ace +er+erhe l+kWr r+
  493153 204 SPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDVARPRDDKQRISAEQHCVARDIVNMIACEDSERVERHEVLGKWRVRM 288
             ************************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.9831289IPR005202Transcription factor GRAS
PfamPF035144.7E-1012288IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MVSVSGSPIQ RLGTYMAEGL RARLEGSGSN IYKALKCNEP TGRELMSYMS VLYEICPYWK  60
FAYTTANAAI LEAIAGETRV HIIDFQIAQG SQYMFLIQEL AKRPGGPPFL RVTGVDDSQS  120
TYARGGGLSL VGERLAKLAQ SCGVPFEFHD AIMSGCKVQR EHLGVEPGFA VVVNFPYVLH  180
HMPDESVSVE NHRDRLLHLI KSLSPKLVTL VEQESNTNTS PFLSRFVETL DYYTAMFESI  240
DVARPRDDKQ RISAEQHCVA RDIVNMIACE DSERVERHEV LGKWRVRMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-48528836318GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap493153
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4195700.0AF419570.1 Arabidopsis thaliana AT4g17230/dl4650c mRNA, complete cds.
GenBankAK2265490.0AK226549.1 Arabidopsis thaliana mRNA for scarecrow-like 13, clone: RAFL07-11-B03.
GenBankBT0010760.0BT001076.1 Arabidopsis thaliana At4g17230/dl4650c mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873210.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLD7MC130.0D7MC13_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.7__2586__AT4G17230.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13