PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 493200
Common NameARALYDRAFT_493200
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 180aa    MW: 19891.1 Da    PI: 6.6888
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
493200genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.5e-183988255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
             ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  493200 39 NFRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALAIKG 88
            69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.25E-333898No hitNo description
PfamPF008475.1E-123888IPR001471AP2/ERF domain
SMARTSM003808.3E-4039102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-323997IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-213997IPR016177DNA-binding domain
PROSITE profilePS5103222.5633996IPR001471AP2/ERF domain
PRINTSPR003674.9E-104051IPR001471AP2/ERF domain
PRINTSPR003674.9E-106278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MQDSSSHGSQ RNLRSPIPER TGKISKTNNE QKGVSKQPNF RGVRMRQWGK WVSEIREPRK  60
KSRIWLGTFS TPEMAARAHD VAALAIKGGS AHLNFPELAY HLPRPASADP KDIQEAAAAA  120
AAVDWKAPES PSSTVTSSPV ADDAFSDLPD LLLDVNDHNK NDGFWDSFPY EDPFFLENY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-153296672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00436DAPTransfer from AT4G16750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap493200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615440.0AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBankAY5608740.0AY560874.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g16750) mRNA, complete cds.
GenBankBT0115760.0BT011576.1 Arabidopsis thaliana At4g16750 mRNA, complete cds.
GenBankBT0205920.0BT020592.1 Arabidopsis thaliana At4g16750 gene, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973410.0Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872170.11e-130ethylene-responsive transcription factor ERF039
SwissprotQ9SUK81e-113ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLD7MCB91e-129D7MCB9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__2633__AT4G16750.11e-130(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.11e-114ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]