PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 493551
Common NameARALYDRAFT_493551
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 343aa    MW: 38931.5 Da    PI: 9.7155
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
493551genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-19184234256
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
              y+GVr+++ +g+WvAeIr p++   r+r++lg+f tae+Aa a++ a+  l+ge
  493551 184 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETAEQAAMAYDTAAYILRGE 234
             59******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.31E-31183243No hitNo description
SMARTSM003807.6E-35184247IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-32184242IPR001471AP2/ERF domain
PROSITE profilePS5103222.682184241IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23184242IPR016177DNA-binding domain
PRINTSPR003673.5E-11185196IPR001471AP2/ERF domain
PfamPF008471.4E-12185234IPR001471AP2/ERF domain
PRINTSPR003673.5E-11207223IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
DQFPKIETSF MHDKLLSSGF YGILSSSTPP QLLGVPIFLE GMKSPLLPSS STPSYFVSPH  60
DHELTSSIHQ PPIASVPWNF LESFPQSQRP DHFPSKPPNL TLFLKEPKLL ELSQSDNNMS  120
PYHKYIPNSL YQSDQNRNEW VEINKTLTNY PSKGFGNYWL STTKTQPMKS KTRKVVQTTT  180
PTKLYRGVRQ RHWGKWVAEI RLPRNRTRVW LGTFETAEQA AMAYDTAAYI LRGEFAHLNF  240
PDLKHQLKSG SLRCMIASLL ESKIQQISSS QVSNSPSPPP PPKVGISEPK NHHMKMESGE  300
EVMMKKQKIH KEVMEGDGVQ LSRMPSLDMD LIWDALSFPY SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-21183241160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-21183241463ATERF1
3gcc_A7e-21183241463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap493551
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0355280.0AL035528.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project).
GenBankAL1615370.0AL161537.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37.
GenBankBT0297290.0BT029729.1 Arabidopsis thaliana At4g13620 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874943.10.0LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ00.0ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLD7MHD90.0D7MHD9_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.7__2984__AT4G13620.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.10.0ERF family protein