PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

493876

Common Name

ARALYDRAFT_493876

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

TCP

Protein Properties

Length: 234aa MW: 26030 Da PI: 6.8965

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
493876	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	105.5	8.6e-33	53	145	3	88
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaesssssasnsssg 88 +kk+++ ++h kv+gR+RRvRl+ +caar+++L++eLG+++d++t+eWLlqqa+p+i+ +tg+ s + ++ ++ +g 493876 53 KKKKPNRDRHRKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQQAEPSIISATGNgikpigttttdsvsqpS---------LTADLMVRHNFEG 145 69*************************************************************66666543322211110.........1111111122222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	24.632	58	112	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.8E-26	58	161	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MDPKKNPTLP SFLNPSPQNL DNDKKRKQTE VKGFDIVVRE KEEEEQIQLL DEKKKKPNRD 60 RHRKVEGRGR RVRLPPLCAA RIYQLTKELG HKSDGETLEW LLQQAEPSII SATGNGIKPI 120 GTTTTDSVSQ PSLTADLMVR HNFEGASRTQ MAANETEQTT GGFDLNYGIG FGFNGVSEIG 180 FGNNQTPGLE LGLSQVAVLN PQVYQQMGQE QSRVLHHHHS YEDQQQSAEK NGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	493876

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB010072	5e-81	AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBank	CP002688	5e-81	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002870658.2	1e-174	transcription factor TCP6
Swissprot	Q9FLM6	1e-121	TCP6_ARATH; Transcription factor TCP6
TrEMBL	D7MIZ9	1e-172	D7MIZ9_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.7__3309__AT5G41030.1	1e-173	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15743	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41030.1	1e-124	TCP family protein

Link Out ? help Back to Top
Phytozome	493876
Entrez Gene	9306729

Publications ? help Back to Top
Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]