PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 493888
Common NameARALYDRAFT_493888
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 467aa    MW: 50657.7 Da    PI: 9.268
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
493888genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.6e-10140164126
              --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
              +k++ C+++ + G Ck+G++C+F H+
   493888 140 PKRSVCKYWKA-GNCKRGEQCQFLHS 164
              79*********.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-7139165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.948139166IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7140164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-7141164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-7141164IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.01E-43165218IPR017986WD40-repeat-containing domain
SMARTSM003208.0E-4170209IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.109.6E-43172460IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5008213.416177218IPR001680WD40 repeat
PROSITE profilePS5029419.354177466IPR017986WD40-repeat-containing domain
PfamPF117151.6E-5192225No hitNo description
PRINTSPR003201.3E-7196210IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780196210IPR019775WD40 repeat, conserved site
SMARTSM0032059249286IPR001680WD40 repeat
SuperFamilySSF509781.01E-43256463IPR017986WD40-repeat-containing domain
SMARTSM003202.8E-4294332IPR001680WD40 repeat
PfamPF004008.0E-6296332IPR001680WD40 repeat
PROSITE profilePS5008210.876316341IPR001680WD40 repeat
PRINTSPR003201.3E-7319333IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780319333IPR019775WD40 repeat, conserved site
SMARTSM003203.4E-5335372IPR001680WD40 repeat
PfamPF004000.0018337371IPR001680WD40 repeat
PRINTSPR003201.3E-7359373IPR020472G-protein beta WD-40 repeat
SMARTSM00320210378419IPR001680WD40 repeat
SMARTSM003204.4422459IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MDEATVIDSV VQSSKVSIFS MFSMDYKAPR RYSHGRNFGV ARQQDFAADI VTRRPYVPYD  60
SGMKKGRNNL SRNLVWTSKE YKAPEGDRPR KIAANGSTKP PVLGTGNCVS NQPRKSAAYG  120
PRSSSISDTR GWGSRDTSSP KRSVCKYWKA GNCKRGEQCQ FLHSWSCFPG LAMVAALEGH  180
KKDLKGIALP QGSDKLFSVS SDGTLRIWDC NSGQCVHSIN LQAEAGSLIS EGPWVFLGLP  240
NAVKAFNVQT SKDLHLEGVV GQVHAMTVAN GMLFAGTSSG SILVWKATDS ESDPFKYLTS  300
LEGHHSGDVT CFVVGGQLLY SGSVDKTIKV WDLNTLQCVM TLKQHTGTVT SLLCWDKCLI  360
SSSLDGTIKV WACSENGSLK VVQTRKQEQS VHALCGMHDA KAKPIIFCSY QNATVGIFDL  420
PSFEERGKMF SRHTIGTLTI GPEGLLFSGD KSGSLRVWSL AAGNKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-201654636322Tako8
6g6n_A3e-201654636322Tako8
6g6n_B3e-201654636322Tako8
6g6n_C3e-201654636322Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap493888
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0304000.0BT030400.1 Arabidopsis thaliana At5g40880 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872138.10.0zinc finger CCCH domain-containing protein 59 isoform X1
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLD7MJ150.0D7MJ15_ARALL; WD-40 repeat family protein
STRINGfgenesh2_kg.7__3321__AT5G40880.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein