PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 493975
Common NameARALYDRAFT_493975
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 242aa    MW: 27764.2 Da    PI: 4.7
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
493975genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.7e-15124214283
             EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEE CS
      B3   2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFk 83 
             +k+l++sdv k  +rl+l+k+ ++e        ++++ ++++++++ ++g  +++++k+  ++++++ vlt+GWk+Fv + gL  + Df++  
  493975 124 KKQLMSSDVDKDqCRLMLSKEQVKEKmlpfleeSEDPVKGVDVSVYGPDGavQKMKFKI--WNGDKTPVLTSGWKQFVADYGLVmTSDFIIVW 214
             699*******998************9*****9977889************666666666..**********************9899998754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.7E-11123228IPR003340B3 DNA binding domain
SuperFamilySSF1019361.84E-17123226IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-15123217No hitNo description
Gene3DG3DSA:2.40.330.103.0E-17124218IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-8125215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MATSTGETTS LTHKEVNVAA ESPEEEDTDD EEDIDDEDDT DDEVASTPLL QISQSRQKQS  60
RKREEKSDKN QPKRVKKHNI MKINIDDFSE ETLRSIEVWY KDELDPQDIF GDNEVTKQFS  120
KPIKKQLMSS DVDKDQCRLM LSKEQVKEKM LPFLEESEDP VKGVDVSVYG PDGAVQKMKF  180
KIWNGDKTPV LTSGWKQFVA DYGLVMTSDF IIVWMFRHIK TRNICFAIAN NSFPLKKKSS  240
R*
Cis-element ? help Back to Top
SourceLink
PlantRegMap493975
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0276650.0AC027665.4 Genomic sequence for Arabidopsis thaliana BAC F5M15 from chromosome I, complete sequence.
GenBankAC0692510.0AC069251.5 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874170.11e-161putative B3 domain-containing protein At4g03170, partial
SwissprotQ9ZR141e-115Y4317_ARATH; Putative B3 domain-containing protein At4g03170
TrEMBLD7MJB91e-176D7MJB9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__3408__AT4G03170.11e-177(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-106B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]