PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

494687

Common Name

ARALYDRAFT_494687, ARALYDRAFT_655156

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 225aa MW: 25231.3 Da PI: 6.3612

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
494687	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.3	2e-11	149	189	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ +L++l+P+ +K++ +++Le Av+Y+k Lq 494687 149 RKRRERINDRLKTLQSLVPNG-----TKVDISTMLEDAVHYVKFLQ 189 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.831	139	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-14	144	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-12	145	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-12	145	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.12E-12	148	193	No hit	No description
Pfam	PF00010	7.7E-9	149	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MENEAFVDGE LESLLGMFNF DQCSSNESSF CNAPNEFDVV SSSDDFFPFS KILQGNYAAV 60 LDGSNHQTNL YDDSRQELVK PRKKQKISSE SNLVTEPKTA WRDGQSLSNY NSSDDENALG 120 LVSNTSKSLK RKAKSNKGIA SDPQSLYARK RRERINDRLK TLQSLVPNGT KVDISTMLED 180 AVHYVKFLQL QIKLLSSDDL WMYALLAHNG LNMGLHHNIL SRLM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	134	LKRKAKS
2	129	151	KRKAKSNKGIASDPQSLYARKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	494687

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB023030	1e-81	AB023030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24F5.
GenBank	CP002688	1e-81	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002862272.2	1e-166	transcription factor bHLH139
Refseq	XP_020888245.1	1e-166	transcription factor bHLH139
Swissprot	Q3E7L7	1e-149	BH139_ARATH; Transcription factor bHLH139
TrEMBL	D7MPZ8	1e-164	D7MPZ8_ARALL; Basic helix-loop-helix family protein
STRING	Al_scaffold_0797_1	1e-165	(Arabidopsis lyrata)
STRING	fgenesh2_kg.8__503__AT5G43175.1	1e-165	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4132	22	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43175.1	1e-141	bHLH family protein

Link Out ? help Back to Top
Phytozome	494687
Entrez Gene	9298349

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]