PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 495114
Common NameARALYDRAFT_495114
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-YC
Protein Properties Length: 202aa    MW: 21786.2 Da    PI: 4.2679
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
495114genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.11.5e-54341331100
   NF-YC   1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100
             ql+++w++q+e+++dfkn++lPl+rikki+kad+dv+m+saeaP+l++kace+fi++lt+rswl+aeenkr+tl+ksdi++av++++++dfl+d+vp+d+
  495114  34 QLRNYWIEQMETVSDFKNRQLPLTRIKKIMKADPDVHMVSAEAPILFAKACEMFIVDLTMRSWLNAEENKRHTLQKSDISNAVASSFTYDFLLDVVPKDD 133
             89************************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.85E-304125IPR009072Histone-fold
PfamPF008081.3E-1853116IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.105.5E-3354131IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MENNNNNGDN MNDGNHQPPP SYSQLPPMAS SNPQLRNYWI EQMETVSDFK NRQLPLTRIK  60
KIMKADPDVH MVSAEAPILF AKACEMFIVD LTMRSWLNAE ENKRHTLQKS DISNAVASSF  120
TYDFLLDVVP KDDGIATADP GFVAMPHPDG GGVPQYYYPP GVVMGTPVAG SGMYAPPQAW  180
PAAAGDGEDE GADNEGNGGG N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-3841131595NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap495114
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256190.0AB025619.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBA10.
GenBankBT0147830.0BT014783.1 Arabidopsis thaliana At5g50480 gene, complete cds.
GenBankBT0150060.0BT015006.1 Arabidopsis thaliana At5g50480 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865810.11e-148nuclear transcription factor Y subunit C-6
SwissprotQ9FGP71e-123NFYC6_ARATH; Nuclear transcription factor Y subunit C-6
TrEMBLD7MQ851e-147D7MQ85_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__930__AT5G50480.11e-148(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50480.11e-101nuclear factor Y, subunit C6
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]