PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

495243

Common Name

ARALYDRAFT_495243

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 175aa MW: 20130.4 Da PI: 9.2181

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
495243	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47	4.8e-15	3	54	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h e Er+RR+++ s ++ Lr+llP + ++K s ++ + +Av+YIk+Lq 495243 3 KMMHRETERQRRQEMASLYASLRSLLPLHF--IKGKRSTSDQVNEAVNYIKYLQ 54 789***********************65..*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.354	1	53	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.68E-15	3	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-11	3	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.06E-10	3	58	No hit	No description
Pfam	PF00010	5.1E-12	3	54	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-7	7	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MEKMMHRETE RQRRQEMASL YASLRSLLPL HFIKGKRSTS DQVNEAVNYI KYLQRKIKEL 60 SVRRDYLMVL SRGSFLGSSN DDSKEEVEMM SRKNHVVVRQ CLVGVEIVFS SRCCGGQPRF 120 SSVLQVLSEH GLCLLNSISS IVDDRLIYTI QAEVNDMALM IDLAELEKRL IRMK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	495243

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317430	0.0	AK317430.1 Arabidopsis thaliana AT5G51780 mRNA, complete cds, clone: RAFL24-28-D24.
GenBank	BT010952	0.0	BT010952.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.
GenBank	BT011640	0.0	BT011640.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020880438.1	1e-123	transcription factor bHLH36
Swissprot	Q9FLI1	1e-115	BH036_ARATH; Transcription factor bHLH36
TrEMBL	D7MRI8	1e-123	D7MRI8_ARALL; Basix helix-loop-helix family protein
STRING	fgenesh2_kg.8__1059__AT5G51780.1	1e-123	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4479	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	1e-118	bHLH family protein

Link Out ? help Back to Top
Phytozome	495243
Entrez Gene	9300207