PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 495266
Common NameARALYDRAFT_495266
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 441aa    MW: 47504.7 Da    PI: 7.5307
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
495266genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06116137426
              ---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
              + C+f+   G C yGd+C++ H+
   495266 116 KVCNFWVD-GNCTYGDKCRYLHC 137
              68**9*99.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.0843359IPR000571Zinc finger, CCCH-type
SMARTSM003560.00183358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6112136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286112139IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5114138IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4116137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5116133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.103.0E-46134430IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509785.77E-47143433IPR017986WD40-repeat-containing domain
SMARTSM003203.5E-5143182IPR001680WD40 repeat
PfamPF004000.0011146182IPR001680WD40 repeat
PROSITE profilePS5008213.182150191IPR001680WD40 repeat
PROSITE profilePS5029420.171150399IPR017986WD40-repeat-containing domain
PROSITE patternPS006780169183IPR019775WD40 repeat, conserved site
PRINTSPR003207.4E-7169183IPR020472G-protein beta WD-40 repeat
SMARTSM003204.4222259IPR001680WD40 repeat
SMARTSM003200.01266303IPR001680WD40 repeat
PfamPF004000.035270303IPR001680WD40 repeat
PROSITE profilePS5008211.678273312IPR001680WD40 repeat
PRINTSPR003207.4E-7290304IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4306343IPR001680WD40 repeat
PfamPF004000.0047308342IPR001680WD40 repeat
PRINTSPR003207.4E-7330344IPR020472G-protein beta WD-40 repeat
SMARTSM003202.4347390IPR001680WD40 repeat
SMARTSM003204.7393430IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDFDLNGGNK RVFNRLGGGG GGGGSTRTMA PTDTRQKVCF HWRAGRCNRS PCPYLHRELP  60
GPGPGQGQGP GYTNKRVAEE SGFAGPSHRR GPGFNGNSNS SWGRFGGNRT VTKTEKVCNF  120
WVDGNCTYGD KCRYLHCWSK GESFSLLTQL DGHEKLVSGI ALPSGSDKLY TGSKDETLRV  180
WDCASGQCTG VLKLGGEVGC VLSEGPWLLV GMPNLVKAWN IETNAEQSLN GPVGQVYSLV  240
VGTDLLFAGT QDGSILAWRY NAATNCFEPA ASLTGHTLAV VTLYVGANRL YSGSMDKTIK  300
VWSLDNLQCI QTLTDHTSVV MSLICWDQFL LSCSLDNTVK IWAAVEGGNL EATYTHKEEH  360
GVLALCGVHD AEAKPVLLCS CNDNTLRLYD LPSFTERGKI FAKQEIRAIQ IGPGGIFFTG  420
DGTGQVKVWK WCTEPTAALP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-211234298323Tako8
6g6n_A4e-211234298323Tako8
6g6n_B4e-211234298323Tako8
6g6n_C4e-211234298323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap495266
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520640.0AJ252064.1 Arabidopsis thaliana partial mRNA for zfwd2 protein (zfwd2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882984.10.0zinc finger CCCH domain-containing protein 63
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLD7MRL10.0D7MRL1_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__1082__AT5G51980.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein