PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

495477

Common Name

ARALYDRAFT_495477

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

HD-ZIP

Protein Properties

Length: 157aa MW: 17819 Da PI: 8.6576

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
495477	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.4e-19	10	64	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eq+++Le++F n+++ + + +L+++lgL++rqV vWFqN+Ra+ k 495477 10 NKKKRLTQEQVRQLEKCFTVNKKLEPDLKLQLSNQLGLPQRQVAVWFQNKRARSK 64 67788************************************************99 PP
2	HD-ZIP_I/II	102.9	2.6e-33	10	102	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+rl++eqv++LE++F+ ++kLep+ K +l+++Lgl +rqvavWFqn+RAR kt+ lE+++ +L+++++a +++++Le++v+ L++e+k+ 495477 10 NKKKRLTQEQVRQLEKCFTVNKKLEPDLKLQLSNQLGLPQRQVAVWFQNKRARSKTQSLEVQHCTLQSKLEAALSDKAKLEHQVQFLQDEVKR 102 59***************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.84E-18	5	67	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.232	6	66	IPR001356	Homeobox domain
SMART	SM00389	3.1E-17	8	70	IPR001356	Homeobox domain
CDD	cd00086	6.43E-15	9	67	No hit	No description
Pfam	PF00046	3.8E-16	10	64	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.7E-18	12	69	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	41	64	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MENSQSQSKN KKKRLTQEQV RQLEKCFTVN KKLEPDLKLQ LSNQLGLPQR QVAVWFQNKR 60 ARSKTQSLEV QHCTLQSKLE AALSDKAKLE HQVQFLQDEV KRTRNQLALF TNQDSPVNNS 120 NLGSCDEGHD DQVVVFDELY ACFVSNGHGS SSTSWV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	495477

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB007644	0.0	AB007644.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K19P17.
GenBank	AK229211	0.0	AK229211.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-49-M21.
GenBank	BT015927	0.0	BT015927.1 Arabidopsis thaliana At5g53980 mRNA, complete cds.
GenBank	BT021920	0.0	BT021920.1 Arabidopsis thaliana At5g53980 gene, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020879304.1	1e-111	homeobox-leucine zipper protein ATHB-52
Swissprot	Q9FN29	1e-105	ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBL	D7MTN0	1e-110	D7MTN0_ARALL; ATHB52
STRING	fgenesh2_kg.8__1293__AT5G53980.1	1e-110	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12107	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	3e-99	homeobox protein 52

Link Out ? help Back to Top
Phytozome	495477
Entrez Gene	9300372