PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 495585
Common NameARALYDRAFT_495585
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 500aa    MW: 55025.3 Da    PI: 9.0693
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
495585genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-152875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ede+l+ +v++ G g+W+++ +  g+ R++k+c++rw ++l
           495585 28 KGPWTAAEDEILAAYVRENGEGNWNAVQKNTGLARCGKSCRLRWANHL 75
                     79******************************************9986 PP
2Myb_DNA-binding22.33.1e-0781118140
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 
                      +g++T +E+ l++++++qlG++ W++ a+ +   +t +++
           495585  81 KGSFTGDEERLIIQLHAQLGNK-WARMAAQIL-SLTINSI 118
                      789*******************.********8.9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.4072379IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-212678IPR009057Homeodomain-like
SMARTSM007171.6E-122777IPR001005SANT/Myb domain
PfamPF002492.1E-142875IPR001005SANT/Myb domain
SuperFamilySSF466891.88E-2229105IPR009057Homeodomain-like
CDDcd001672.91E-103075No hitNo description
PROSITE profilePS500906.06376110IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-1179111IPR009057Homeodomain-like
SMARTSM007170.003980128IPR001005SANT/Myb domain
PfamPF002494.8E-681118IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MILYGGGGAG KDGGSTNHLS DGGVILKKGP WTAAEDEILA AYVRENGEGN WNAVQKNTGL  60
ARCGKSCRLR WANHLRPNLK KGSFTGDEER LIIQLHAQLG NKWARMAAQI LSLTINSIHI  120
HNIIINNNNN NNIIPNHQLH PHPQHYHQQQ QQQQHNHHHH HHHHQQQQHH HQQMYFQPQS  180
SQPNTPSSSP LPSPTPVSAN ANSSSSFTFH TTTANLLHPL SPHTPNTPQT PSQLSSTPPP  240
PPLSSPLSSP RNNQYPTLPL FALPSSQINN NNANFTFPRP PPLLQPPSSL FAKRYNNANT  300
PLNCINRVST APFSPVSRDS YTSFLTLPYP SPTAQTATYH NTNNNYSSSP SFSLNPSSSS  360
SYPTATSSPS FLHSHYTPSS TSFHTNPVYS MKPEQLPSNQ IPQIDAFNNV NNFTDNERQN  420
HNLNSSGVHR RSSSCSLLED VLEEAEALAS GGRGRPPKRR QLTASPPNNN DNNNNDNFFS  480
VSFGHYDSSD NLCSVQGTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-2025121196C-Myb DNA-Binding Domain
1msf_C9e-2025121196C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1454459RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB97 and MYB101, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap495585
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in pollen tube 4 hours after pollen germination. {ECO:0000269|PubMed:19714218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0170590.0AB017059.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K13P22.
GenBankAF3719790.0AF371979.1 Arabidopsis thaliana putative transcription factor MYB120 (MYB120) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883573.10.0transcription factor MYB120
SwissprotQ94FL70.0MY120_ARATH; Transcription factor MYB120
TrEMBLD7MUY90.0D7MUY9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__1401__AT5G55020.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99391934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.15e-85myb domain protein 120
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]