PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 495753
Common NameARALYDRAFT_495753
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 390aa    MW: 44348.9 Da    PI: 9.0435
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
495753genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.21.3e-35431941128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......... 77 
             lp+G++F+Ptd+el+ e+L++kv+gk+        +           +i+   +i++++P++Lp  v+ +  + +fF+k +++y+tg+rk+r+          
  495753  43 LPAGVKFDPTDQELI-EHLEAKVKGKEenkkwsssH---PlidefipTIDGEdGICYTHPQKLP-GVTRDGLSKHFFHKPSRAYTTGTRKRRKiiqtdhdsev 140
             799************.99********9776665551...044443333555545**********.555666799******************88999999999 PP

     NAM  78 ..tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                ++ +W++tgk+++v+  +g++ g+kk+Lv+y   g+++++ekt+Wvmh+y+l
  495753 141 tgSSETRWHKTGKTRPVMI-NGQQRGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 194
             7766889************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-3835213IPR003441NAC domain
PROSITE profilePS5100531.38943213IPR003441NAC domain
PfamPF023658.1E-1644194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MKNSKCNLID SKLEEHHHLC GSKHCPGCGR MIQAATKPNW VGLPAGVKFD PTDQELIEHL  60
EAKVKGKEEN KKWSSSHPLI DEFIPTIDGE DGICYTHPQK LPGVTRDGLS KHFFHKPSRA  120
YTTGTRKRRK IIQTDHDSEV TGSSETRWHK TGKTRPVMIN GQQRGCKKIL VLYTNFGKNR  180
RPEKTNWVMH QYHLGINEEE REGELVVSKI FYQTQPRQCV SNIHWSDNHG SKDMIGIGVG  240
DEISVAATLQ TLGSGVGDIV SRVNMNPYTR GFDEGTSEAS KGRENQRVYG TCEEVHNEIL  300
TSSTSSMSSH HMIHDHHNQH HQIGDRRDLH MSSSYPMTPT ITSRNDSIFH GTSTMPFQGS  360
VVWFGIRRPN YGLYHSYLHR RRKFLTNTCI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap495753
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133920.0AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871932.10.0NAC domain-containing protein 101
SwissprotQ9M0F81e-114NAC75_ARATH; NAC domain-containing protein 75
TrEMBLD7MLU30.0D7MLU3_ARALL; ANAC099 (Fragment)
STRINGfgenesh2_kg.8__1569__AT5G56620.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149281720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.10.0NAC domain containing protein 99
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]