PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 495811
Common NameARALYDRAFT_495811
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 248aa    MW: 27922.5 Da    PI: 4.4162
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
495811genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.9e-1457100755
             HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               Er+RR+++N++++ Lr+++P+      +K++Ka+i + A+ YIk Lq
  495811  57 VSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAISYIKGLQ 100
             57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.2795099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.41E-1353100No hitNo description
SuperFamilySSF474592.49E-1753116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-1456105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1756115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-1157100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEDIVDQEFS NYWEPNSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER  60
NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIKGLQ YEEGKLEAEI RELESTPKSS  120
LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLDLKVT FMGERTMVVS VTCNKRTDTM  180
VKLCEVFESL NLKILTSNLT SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYKETQSPT  240
LSIDSLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-1455109963Transcription factor MYC2
5gnj_B7e-1455109963Transcription factor MYC2
5gnj_E7e-1455109963Transcription factor MYC2
5gnj_F7e-1455109963Transcription factor MYC2
5gnj_G7e-1455109963Transcription factor MYC2
5gnj_I7e-1455109963Transcription factor MYC2
5gnj_M7e-1455109963Transcription factor MYC2
5gnj_N7e-1455109963Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap495811
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0866660.0AY086666.1 Arabidopsis thaliana clone 266884 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864502.10.0transcription factor bHLH35 isoform X2
SwissprotQ2HIV91e-175BH035_ARATH; Transcription factor bHLH35
TrEMBLD7MMS11e-180D7MMS1_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.8__1627__AT5G57150.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-163bHLH family protein