PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 496092
Common NameARALYDRAFT_496092
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 281aa    MW: 30556.9 Da    PI: 5.6296
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
496092genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.54e-30131184155
  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
   496092 131 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 184
              59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-19128188IPR009057Homeodomain-like
PROSITE profilePS5129411.019128187IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-31129189IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23132184IPR006447Myb domain, plants
PfamPF002494.5E-8134183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGKEVMMSDY GDDDGGDEDR VPEWEIGLPN GDDLTPLSQS LVPSILAFAF SIIPERSRTI  60
HDVNRSSQTT LSSLRSSANA SSVMEEFVDR VGSSSPGSDP KKQKKSGGGE AAVAEEGDSG  120
TEDASGRTSK RPRLVWTPQL HKRFVDVVAH LGIKNAVPKT IMQLMNVEGL TRENVASHLQ  180
KYRLYLKRIQ GLTTEEDPYS SDQLFSSTPV PPQCFQDDGG GSNGKLGIPV PGYGNQMSMQ  240
GHYHQYRNHS NESNQYMMQR NKFGTMVTSP SVGGGDVNDK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-36131187157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is a critical component of the regulatory circuit of the circadian clock. Binds to specific sites on CCA1 promoter leading to CCA1 activation. Is required for the rhythmic expression of other clock genes such as LHY, GI and APRR1/TOC1. {ECO:0000269|PubMed:21447790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap496092
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0880890.0AY088089.1 Arabidopsis thaliana clone 41153 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869154.10.0transcription factor BOA
SwissprotQ9LTH41e-167PCLL_ARATH; Transcription factor BOA
TrEMBLD7MSG30.0D7MSG3_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__1908__AT5G59570.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40552758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.11e-146G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]