PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

496158

Common Name

ARALYDRAFT_496158

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Dof

Protein Properties

Length: 260aa MW: 28449.5 Da PI: 8.7673

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
496158	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	55	113	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 al+cprCdstntkfCyynnysl+qPryfCk+CrryWtkGG+lrn+PvGgg+rknk+s+ 496158 55 LALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRST 113 5789****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	54	110	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-33	57	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.45	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048364	Biological Process	root development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MDHLLQQQDV FGNYNKAREA MGLSYPSNPT QLDNDQKKPS PATAAAATRP QPPELALRCP 60 RCDSTNTKFC YYNNYSLTQP RYFCKSCRRY WTKGGTLRNI PVGGGCRKNK RSTSSVTRSL 120 RTTPEPASHD GKAFSVASFN GYNNNEHIDL SLAFALLNKQ HPGSSSQLGL HSEFGNSHQS 180 DMEGVFGTSQ QKENATYAFG NGSSGLGDPS RVLWGFPWQM NGESFGMMNI GGGGGHVDQI 240 DPGREIWTNM NYINSGALM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	496158

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium (PubMed:30626969). Induced by the transcription factor MONOPTEROS (MP) in cells relevant for root initiation, and later in vascular tissues and hypophysis (PubMed:20220754). {ECO:0000269\|PubMed:20220754, ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY086054	0.0	AY086054.1 Arabidopsis thaliana clone 20852 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020871890.1	0.0	dof zinc finger protein DOF5.3
Swissprot	Q84TE9	1e-178	DOF53_ARATH; Dof zinc finger protein DOF5.3
TrEMBL	D7MTS7	0.0	D7MTS7_ARALL; Dof-type zinc finger domain-containing protein
STRING	fgenesh2_kg.8__1974__AT5G60200.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6132	18	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-159	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	496158
Entrez Gene	9300749

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]