PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 496665
Common NameARALYDRAFT_496665
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 189aa    MW: 21672 Da    PI: 4.6913
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
496665genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM111.31e-3431181128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvgl 102
             lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y+++PwdLp k+ +e ++wyf+s++         ++r+t++gyW + g d++++++ ++++vg+
  496665   3 LPPGFRFFPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYHYDPWDLPGKALGEGRQWYFYSRKT--------QERVTSNGYWGSMGMDEPIYTSsTHKKVGI 96 
             79*************************999.99***************87778899*****9975........5799****************9877888*** PP

     NAM 103 kktLvfykgrapkgektdWvmheyrl 128
             kk L+fy g++    +t+W+m+ey+l
  496665  97 KKYLTFYLGDS----QTNWIMQEYSL 118
             *******7654....68*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-441156IPR003441NAC domain
PROSITE profilePS5100541.9583156IPR003441NAC domain
PfamPF023655.1E-224118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MNLPPGFRFF PTDEELVVHF LHRKASLLPC HPDVIPDLDL YHYDPWDLPG KALGEGRQWY  60
FYSRKTQERV TSNGYWGSMG MDEPIYTSST HKKVGIKKYL TFYLGDSQTN WIMQEYSLPD  120
SSSSSSRSSK RSNRASSSSS HKPDYSKWVI CRVYEQNCSE EEDDDGTELS CLDEVFLSLD  180
DLDEVSLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-36116215171NO APICAL MERISTEM PROTEIN
1ut4_B9e-36116215171NO APICAL MERISTEM PROTEIN
1ut7_A9e-36116215171NO APICAL MERISTEM PROTEIN
1ut7_B9e-36116215171NO APICAL MERISTEM PROTEIN
3swm_A9e-36116218174NAC domain-containing protein 19
3swm_B9e-36116218174NAC domain-containing protein 19
3swm_C9e-36116218174NAC domain-containing protein 19
3swm_D9e-36116218174NAC domain-containing protein 19
3swp_A9e-36116218174NAC domain-containing protein 19
3swp_B9e-36116218174NAC domain-containing protein 19
3swp_C9e-36116218174NAC domain-containing protein 19
3swp_D9e-36116218174NAC domain-containing protein 19
4dul_A9e-36116215171NAC domain-containing protein 19
4dul_B9e-36116215171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap496665
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1187830.0AK118783.1 Arabidopsis thaliana At5g64530 mRNA for unknown protein, complete cds, clone: RAFL21-11-N14.
GenBankBT0257460.0BT025746.1 Arabidopsis thaliana At5g64530 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864908.11e-138NAC domain-containing protein 104
SwissprotQ8GWK61e-122NC104_ARATH; NAC domain-containing protein 104
TrEMBLD7MRV01e-137D7MRV0_ARALL; ANAC104/XND1
STRINGfgenesh2_kg.8__2481__AT5G64530.11e-137(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-121xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]