PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

496854

Common Name

ARALYDRAFT_496854

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 245aa MW: 26428.8 Da PI: 8.1455

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
496854	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.3	8.7e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++++q+++e++l+ 496854 2 SCNGCRVLRKGCSENCILRPCIqwietADAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLR 103 6*******************9998666789**************************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.685	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET VLRGGSLRPI PELGGGFAGF 120 PSPTSEEASE ICTEMLNLQQ NDSTGRNIYH HSRFSSSRSR STMDSSSPTK RKRLASDQQP 180 SSELDLSLIP NFPVKTTTPS STRRRSLTPS MNSEDSVTTT AFCDKGDVYG NGGGETSKLL 240 NLFV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	496854

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473872	0.0	AB473872.1 Arabidopsis thaliana ASL39 mRNA for ASYMMETRIC LEAVES2-like 39 protein, complete cds.
GenBank	AF447894	0.0	AF447894.1 Arabidopsis thaliana LOB DOMAIN 37 (LBD37) mRNA, complete cds.
GenBank	BT024477	0.0	BT024477.1 Arabidopsis thaliana At5g67420 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020871220.1	0.0	LOB domain-containing protein 37
Swissprot	Q9FN11	1e-156	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	D7MUQ7	0.0	D7MUQ7_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.8__2670__AT5G67420.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-146	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	496854
Entrez Gene	9302776

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]