PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 496923
Common NameARALYDRAFT_496923
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 564aa    MW: 62348.5 Da    PI: 4.6707
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
496923genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.45.1e-1102135603358
    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105
             +++++cA+ +s++d ++a+++L +++e +s+ gdp++R+ +yfteAL++rl+       +  +p ++s++++++ + ++k++++++P+ kf+hltaNqaIlea
  496923 213 RAIYDCAR-ISESDPNEASKTLVQIRESVSELGDPTERVGFYFTEALSNRLSP------D--SPATSSSSSTEDLILSYKTLNDACPYSKFAHLTANQAILEA 306
             67899**9.8899***************************************9......3..3344444568999**************************** PP

    GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVn 205
             +e+++++Hi+Df+i qG+QWpaLlqaLa+R++g+p ++R+ g+ +p+ g   + +l +tg+rL++fA+ l+++f+f + + + ++ l+ +++rv+p+E+laVn
  496923 307 TENSNKIHIVDFGIVQGIQWPALLQALATRSSGKPtQIRVSGIPAPSLGdsPEPSLIATGNRLRDFAKVLDLNFDFIP-ILTPIHLLNGSSFRVDPDEVLAVN 408
             *******************************77776**********99998999************************.799********************* PP

    GRAS 206 lvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rre 307
             ++lql++llde+ ++ +   + L+l ksl+P+vv++ e e+++n+  F++r+ +al++ysa+f+slea+l+r+seer+ vErel+gr+i+ ++  e++  +re
  496923 409 FMLQLYKLLDETPTIVD---TALRLAKSLNPRVVTLGEYEVSLNRVGFANRVKNALQFYSAVFESLEANLGRDSEERVRVERELFGRRISGLIGPEKTGiHRE 508
             *********99999999...****************************************************************************99989** PP

    GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358
             r+e++e+Wr  +e+aGF++v+ls++a++qak ll +++ s+ y+  e++  +
  496923 509 RMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNySNLYSFVESKPGF 560
             **************************************99999999887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.529185555IPR005202Transcription factor GRAS
PfamPF035141.8E-107213560IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQHHHHH HHHQDHQLFG INPLSLNPWP NTSLAFGLSG  60
SAFPDPFQVS PGGDSNDPAF PFPNLDHHHA TSAGGGFRLS DFGGGTGGGE FESDEWMETL  120
ISGGDAPDCD TWHNNPDYVI YGPDPFDTYP SRLSVQPSDL NTSSPLPHPP PTLWPPSSPL  180
SIPPLPHESP TKEDPETNDS EDDDFDLEPP LLRAIYDCAR ISESDPNEAS KTLVQIRESV  240
SELGDPTERV GFYFTEALSN RLSPDSPATS SSSSTEDLIL SYKTLNDACP YSKFAHLTAN  300
QAILEATENS NKIHIVDFGI VQGIQWPALL QALATRSSGK PTQIRVSGIP APSLGDSPEP  360
SLIATGNRLR DFAKVLDLNF DFIPILTPIH LLNGSSFRVD PDEVLAVNFM LQLYKLLDET  420
PTIVDTALRL AKSLNPRVVT LGEYEVSLNR VGFANRVKNA LQFYSAVFES LEANLGRDSE  480
ERVRVERELF GRRISGLIGP EKTGIHRERM EEKEQWRVLM ENAGFESVKL SNYAVSQAKI  540
LLWNYNYSNL YSFVESKPGF ISLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1442105643362GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap496923
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0107000.0AB010700.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUD21.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883205.10.0scarecrow-like protein 4
SwissprotQ9FL030.0SCL4_ARATH; Scarecrow-like protein 4
TrEMBLD7MLY40.0D7MLY4_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.8__2739__AT5G66770.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]