PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 497036
Common NameARALYDRAFT_497036
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 262aa    MW: 30196 Da    PI: 9.4577
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
497036genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-18855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++v+ +G g+W+++++  g++R +k+c++rw +yl
           497036  8 KGPWTAEEDRLLIEYVRVHGEGRWNSVSKLAGLKRNGKSCRLRWVNYL 55
                     79********************************************97 PP
2Myb_DNA-binding52.21.4e-1661105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W++Iar ++ gRt++++k++w+++
           497036  61 RGQITPHEENIILELHAKWGNR-WSSIARSLP-GRTDNEIKNYWRTH 105
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.975155IPR017930Myb domain
SMARTSM007172.1E-16757IPR001005SANT/Myb domain
SuperFamilySSF466894.69E-307102IPR009057Homeodomain-like
PfamPF002492.5E-17855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-24962IPR009057Homeodomain-like
CDDcd001677.43E-121055No hitNo description
PROSITE profilePS5129425.53556110IPR017930Myb domain
SMARTSM007171.6E-1560108IPR001005SANT/Myb domain
PfamPF002491.8E-1461105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2463109IPR009057Homeodomain-like
CDDcd001674.73E-1165106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVEEVWRKGP WTAEEDRLLI EYVRVHGEGR WNSVSKLAGL KRNGKSCRLR WVNYLRPDLK  60
RGQITPHEEN IILELHAKWG NRWSSIARSL PGRTDNEIKN YWRTHFKKKA KPTTNNAEKI  120
KSRLLKRQQF KEQREIELQQ EQQLFQFDQL DMKKIISLLE DNNSSSSSDG GGDVFYSPYQ  180
ITHSSKPFGY NPNSLEEQLQ GRFTPVNIPD ANTMSEDNAI WDGFWNMDVV DGNGGNLGVV  240
AATAAYGPRK PYFHNLVIPF C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-26811027128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap497036
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1337050.0AY133705.1 Arabidopsis thaliana clone C103160 putative myb protein (At4g13480) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002863237.20.0myb-related protein 305 isoform X2
TrEMBLD7MV590.0D7MV59_ARALL; MYB transcription factor
STRINGfgenesh2_kg.9__1__AT4G13480.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-145myb domain protein 79