PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 497116
Common NameARALYDRAFT_497116
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family FAR1
Protein Properties Length: 181aa    MW: 20859.8 Da    PI: 8.8022
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
497116genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.22.5e-2224106189
    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
             +fY eY+k +GF vr+ + ++s  +g+   r++ C+k+g+++++ ++      + +++r gCka++ vk+ek+gkw+vt++++eHnH+l
  497116  24 EFYVEYSKILGFVVRMMQRRRSGIDGRSLARRLGCNKQGFSRTDPRS------SCSSSREGCKATILVKMEKSGKWVVTRFVKEHNHSL 106
             6****************************************998877......9999******************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-2024107IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MTGDLKLHEP YVGMKFESEE EAKEFYVEYS KILGFVVRMM QRRRSGIDGR SLARRLGCNK  60
QGFSRTDPRS SCSSSREGCK ATILVKMEKS GKWVVTRFVK EHNHSLLFIG SSSNSFADKD  120
RKIKELAEEI ECQDRLCDAY RDRLVSFIDN FEHYTGELSL KVRDIVENIK KLECQIQTRA  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMap497116
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0120770.0BT012077.1 Arabidopsis thaliana At4g12850 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002863287.21e-131protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLD7MVJ01e-130D7MVJ0_ARALL; Far-red impaired responsive family protein
STRINGfgenesh2_kg.9__81__AT4G12850.11e-130(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39182855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.11e-107FAR1 family protein