PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 497265
Common NameARALYDRAFT_497265
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 242aa    MW: 27085.4 Da    PI: 5.4767
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
497265genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-1364110354
             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
             r+h ++E+rRRdriNs +  Lr+l+P++      Kl+Ka+ L  ++e +k+L
  497265  64 RSHRQAEKRRRDRINSHLTALRKLVPNS-----DKLDKAALLASVIEQVKEL 110
             68*************************8.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.24E-1360116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.31361110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1464116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-1064110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.88E-1164113No hitNo description
SMARTSM003533.1E-1167116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.1E-5152216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MENSYDSSKW SDSTTPYMVS WSLQSESPDS DWSRFNLGFS FSSSGYFPAD DCVGGIEKAE  60
SLSRSHRQAE KRRRDRINSH LTALRKLVPN SDKLDKAALL ASVIEQVKEL KQKATESPSF  120
EDLPTEADEV TVQLETISDF ESNTNTIIFK ASFCCEDQPE AISEIIRVLT KLNLETIQAE  180
IMCVGERMRI NFILKDSNCN ETTNIAASAK ALKQSLCAAL NRITSSSSTT SSVCRIRSKR  240
QR
Cis-element ? help Back to Top
SourceLink
PlantRegMap497265
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935830.0AB493583.1 Arabidopsis thaliana At2g40200 mRNA for hypothetical protein, partial cds, clone: RAAt2g40200.
GenBankAF4885860.0AF488586.1 Arabidopsis thaliana clone bHLH051 putative bHLH transcription factor mRNA, complete cds.
GenBankBT0299970.0BT029997.1 Arabidopsis thaliana At2g40200 mRNA, complete cds.
GenBankBT0300510.0BT030051.1 Arabidopsis thaliana At2g40200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002862876.21e-177transcription factor bHLH51, partial
SwissprotQ9XEF01e-155BH051_ARATH; Transcription factor bHLH51
TrEMBLD7MWE41e-177D7MWE4_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.108__1__AT2G40200.11e-178(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-156bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]