PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 497373
Common NameARALYDRAFT_497373
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 415aa    MW: 46682.9 Da    PI: 8.8149
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
497373genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-18105151148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l+++v+q+G + W++I++++  gR +kqc++rw+++l
           497373 105 KGQWTAEEDRKLIRLVRQHGERKWALISEKLE-GRAGKQCRERWHNHL 151
                      799*****************************.*************97 PP
2Myb_DNA-binding47.63.8e-15158199245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + W++eE++ lv+ + + G++ W+ Ia+ ++ gRt++++k++w+
           497373 158 DGWSEEEEKVLVESHMRIGNK-WAEIAKLIP-GRTENSIKNHWN 199
                      56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.344100155IPR017930Myb domain
SuperFamilySSF466895.75E-29102198IPR009057Homeodomain-like
SMARTSM007171.3E-16104153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-27106159IPR009057Homeodomain-like
CDDcd001671.57E-15108151No hitNo description
PfamPF139211.2E-19108166No hitNo description
PROSITE profilePS5129415.649156206IPR017930Myb domain
SMARTSM007172.3E-13156204IPR001005SANT/Myb domain
CDDcd001673.44E-10160202No hitNo description
Gene3DG3DSA:1.10.10.603.7E-19160204IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEDRRLVHGA VPPLTAVERF LYGQKNDVLC SKKKECSRDR PIVKTKMSIE TRSDNKENTT  60
FGPTREKHLV LNGGNRSPIG ELVARSAARD YQNSTKKRSY KNLIKGQWTA EEDRKLIRLV  120
RQHGERKWAL ISEKLEGRAG KQCRERWHNH LRPNIKKDGW SEEEEKVLVE SHMRIGNKWA  180
EIAKLIPGRT ENSIKNHWNA TKRRQNSKRK HKRESNADNN DTDTTSKASG VMDINKNNDE  240
NTISVLSTPN LDQIYSDGDS ASSMLGDPYD EELVYLQNIF ANHPISLENI GLSQTSDEVT  300
QSSATGFMTK NPKPNLHNNV GTHHQEAAIT APANTPHLAS DIYLSYLLNG TTPSYSDTHF  360
PSSSSSTSST TVEHGGRNEF LEPQANSTSE RREMDLIEML SGSIQGSNIC FPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-431032052104MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-4310320556158MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-4310320556158MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-431032052104C-Myb DNA-Binding Domain
1msf_C1e-431032052104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201212KRRQNSKRKHKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap497373
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3719780.0AF371978.1 Arabidopsis thaliana putative transcription factor MYB119 (MYB119) mRNA, complete cds.
GenBankDQ4470910.0DQ447091.1 Arabidopsis thaliana clone pENTR221-At5g58850 myb family transcription factor (At5g58850) mRNA, complete cds.
GenBankDQ6533800.0DQ653380.1 Arabidopsis thaliana clone 0000013309_0000009608 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887723.10.0myb-like protein Q
SwissprotQ9FIM40.0MY119_ARATH; Transcription factor MYB119
TrEMBLD7MX380.0D7MX38_ARALL; MYB119
STRINGfgenesh2_kg.277__1__AT5G58850.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.10.0myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]