PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 497421
Common NameARALYDRAFT_497421
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 192aa    MW: 21906.2 Da    PI: 8.6655
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
497421genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.65.7e-133341447
                     HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++++++G++ W+tIar ++ gRt++++k++w+++
           497421  3 ELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 34
                     799******.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.033139IPR017930Myb domain
SMARTSM007170.0011237IPR001005SANT/Myb domain
CDDcd001678.96E-9235No hitNo description
Gene3DG3DSA:1.10.10.603.6E-15335IPR009057Homeodomain-like
PfamPF002492.0E-10334IPR001005SANT/Myb domain
SuperFamilySSF466896.08E-10344IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
RFELHAKWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKTK SPTNNAEKTK NRILKRQQFQ  60
QQRQMELQQE QQLLQFNQID MKKIMSLLDD DNNNNGDNNT FSSSSSGSSG EGGAFYVPHQ  120
ITHSTTTSGC DPNSNGYYPV VPVTMPEANV NEDNAIWDNL WNVDFEGQGS FGGAACAPRK  180
QYFQNMVIPF Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMap497421
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0629040.0AF062904.1 Arabidopsis thaliana putative transcription factor (MYB71) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002862506.21e-142transcription factor MYB78, partial
TrEMBLD7MXG81e-142D7MXG8_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.397__1__AT3G24310.11e-143(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-90myb domain protein 305