PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 497512
Common NameARALYDRAFT_497512
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 140aa    MW: 15866.4 Da    PI: 8.0651
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
497512genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-054870123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             y+C++C + F ++  L  H++ H
   497512 48 YSCNYCQRKFYSSQALGGHQNAH 70
             99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.02E-74575No hitNo description
Gene3DG3DSA:3.30.160.608.7E-44673IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2814875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MDFQPNTSLR LSLPSYKNHQ LNLELVLEPS SASSSTNSSS CLEQPRVYSC NYCQRKFYSS  60
QALGGHQNAH KLERTLAKKS RELFRSSNTV DSDQPYPFSG RFELYGRGYE GFLESGGSRD  120
FSSRRVPESG LDQDQEKSHL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap497512
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114821e-179AB011482.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2.
GenBankATHZFPB1e-179L39645.1 Arabidopsis thaliana zinc finger protein 2 (ZFP2) mRNA, complete cds.
GenBankCP0026881e-179CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002862338.22e-98zinc finger protein 2
SwissprotQ392612e-87ZFP2_ARATH; Zinc finger protein 2
TrEMBLD7MXY55e-97D7MXY5_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.675__1__AT5G57520.18e-98(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.16e-88zinc finger protein 2