PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 49950
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 60aa    MW: 6947.9 Da    PI: 11.5589
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
49950genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP269.55.9e-22454256
    AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
           +++GVr ++ +gr++AeIrd ++    ++r++lg+f+taeeAa+a+++a+++l+g+
  49950  4 HFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDTAEEAARAYDNAARALRGA 54
           69*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.13E-25360No hitNo description
PROSITE profilePS5103222.642460IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22460IPR016177DNA-binding domain
SMARTSM003801.2E-29460IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-32460IPR001471AP2/ERF domain
PfamPF008478.9E-15453IPR001471AP2/ERF domain
PRINTSPR003677.7E-12516IPR001471AP2/ERF domain
PRINTSPR003677.7E-122743IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
KEAHFRGVRK RPWGRFAAEI RDPWKKTRVW LGTFDTAEEA ARAYDNAARA LRGAKAKTNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21160262ATERF1
3gcc_A2e-21160262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024520807.13e-35uncharacterized protein LOC112342754
SwissprotQ9FE678e-32ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLD8S1N71e-33D8S1N7_SELML; DNA-directed RNA polymerase subunit beta
TrEMBLD8SX552e-34D8SX55_SELML; Uncharacterized protein (Fragment)
STRINGEFJ076243e-35(Selaginella moellendorffii)
STRINGEFJ110253e-35(Selaginella moellendorffii)
STRINGEFJ217362e-34(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-24ERF domain protein 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]