PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 50006.m000011
Common NameRCOM_2067390
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 187aa    MW: 20769.7 Da    PI: 6.5159
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
50006.m000011genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.5e-061371655
                   HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   +N+ ++ Lr+++P++   + ++ + a+i+  A++++k+L+
  50006.m000011  1 MNDYLSALRSMMPPS---YVQRGDQASIVGGAINFVKELE 37
                   8**************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.88E-6141No hitNo description
PROSITE profilePS5088810.76136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-8156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-6156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MNDYLSALRS MMPPSYVQRG DQASIVGGAI NFVKELEQLL QSLEAHKRIK KESTEMESSS  60
SSSSSSSLFS YFFTFPQYST SSDDQSTGKK RSAIKADVEV TMVESHANLK ILIRRQPKQL  120
LKIVGGLYSL CLGILHINVT TTVDHMVLYS FSVKAEEECQ LTSVNEIATA VYEMVGRIQD  180
QTVPNIS
Cis-element ? help Back to Top
SourceLink
PlantRegMap50006.m000011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002539136.21e-136transcription factor bHLH94, partial
SwissprotQ9C7T41e-55BH096_ARATH; Transcription factor bHLH96
TrEMBLB9TLL71e-135B9TLL7_RICCO; DNA binding protein, putative
STRINGXP_002539136.11e-136(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]