PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

50093

Common Name

MICPUCDRAFT_50093

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

C2H2

Protein Properties

Length: 1073aa MW: 109936 Da PI: 7.4471

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
50093	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.7e-05	475	500	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kC+ dCgk F +s LkrH + H 50093 475 FKCGypDCGKIFGAQSGLKRHVTVsH 500 89*******************98777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	8.5E-6	473	496	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.115	475	505	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	475	500	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	477	500	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.452	697	724	IPR007087	Zinc finger, C2H2
SMART	SM00355	5.9	697	719	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	699	719	IPR007087	Zinc finger, C2H2
SMART	SM00355	17	793	818	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF55298	8.8E-20	956	1070	IPR013813	Endoribonuclease L-PSP/chorismate mutase-like
Gene3D	G3DSA:3.30.1330.40	4.1E-19	957	1070	IPR013813	Endoribonuclease L-PSP/chorismate mutase-like
Pfam	PF01042	6.9E-14	958	1068	IPR006175	YjgF/YER057c/UK114 family

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1073 aa Download sequence Send to blast
MATSAVDATL KTGNVNAGAD SDATTTAGGA PSPSPARDAA AKDATTAAAP NAPGGNAAEK 60 EPAMTPTQPA WGKLASMVES IVDAPPPGGG RGGKGGRGGR GGKHAKAGRG GSGAMRVVVR 120 HDAPPAAAPA KDVDANENAD AEKAATPTPS ADTSPTTATA TASTLQTKNP VVVVSEAVAA 180 TTAKPVSPVT PEEEPSPAAA VAAAAAPAAE GETDEEILAR CPPPPPGFLI VRSESVGDGP 240 CPFCDSPMKA RGIKKHLAHC KEKPKGYKPA CCPPGFVPIK DSSTEGNKLR EDAAKLANEA 300 ADALREKRME EKKVKAAEKA AATEAAAKAS AKKAGGEEDK DSSTGGAGGI EEGDEQGNGK 360 DGDTPKSNKL IFRAKNGAAA KAAAAAAKPA EVLPGTRPRR ASAKAAAMAE ESSESESESE 420 SGSEPAAAKN LTARPRRKSA TLGVAAAAKA AGPARRASGG KAAVIMHVDL ASKGFKCGYP 480 DCGKIFGAQS GLKRHVTVSH AKDHGDQPFT VVDEATAAAN KGKAGAGGRA RRASAVSNDF 540 AGLSEDEDDE LFEMRATNFT KGGGRGHRSD KDATEISTEE EDDDETIVRG KPTHGGIARF 600 TAGVAQDEDG DEDSEMLGVV AEATYKARAA TREAEAAIAD AKAADMDYEQ GGRAGRKRGA 660 ATPPAGRGRP KQKQKGNKGA ANAKNSADAK DAPKEKEVCE ICGKVFAAVQ GVPSHYKSHV 720 AKAEDAETKQ KAERALYQFQ QRIRDRREKA VVAARSGARA RREAEAEDED EDEDSPGGGA 780 NDAAPLVLNP SARNCSHCGQ GVRFSTQKDL ISHMWSEHKV VAISDPSLVG GGGNRGRASR 840 QASDGWDSGA AAAAAAAAIA AYPNDWIGGG GKNNALAFPG VDAGGTMTIS TGLVQSMISR 900 IDALEKTVAS LGYGGGNGNA NAGAIVASGG NGNAAAMQMH PFDAAAEIKR IPVRGARPGY 960 SPIVTFGRMV WLTGIVALQT VDQDVEGQTR QALEHMTLLL HKAGTDPTHL LRLNVYLADI 1020 RCADRMYKAW NEYFEGLGLS EGQRPVRITH EARLKNEGFR VEVHAEAVLP AK*

Sequence ? help Back to Top

Protein Sequence Length: 1073 aa Download sequence Send to blast

MATSAVDATL KTGNVNAGAD SDATTTAGGA PSPSPARDAA AKDATTAAAP NAPGGNAAEK  60
EPAMTPTQPA WGKLASMVES IVDAPPPGGG RGGKGGRGGR GGKHAKAGRG GSGAMRVVVR  120
HDAPPAAAPA KDVDANENAD AEKAATPTPS ADTSPTTATA TASTLQTKNP VVVVSEAVAA  180
TTAKPVSPVT PEEEPSPAAA VAAAAAPAAE GETDEEILAR CPPPPPGFLI VRSESVGDGP  240
CPFCDSPMKA RGIKKHLAHC KEKPKGYKPA CCPPGFVPIK DSSTEGNKLR EDAAKLANEA  300
ADALREKRME EKKVKAAEKA AATEAAAKAS AKKAGGEEDK DSSTGGAGGI EEGDEQGNGK  360
DGDTPKSNKL IFRAKNGAAA KAAAAAAKPA EVLPGTRPRR ASAKAAAMAE ESSESESESE  420
SGSEPAAAKN LTARPRRKSA TLGVAAAAKA AGPARRASGG KAAVIMHVDL ASKGFKCGYP  480
DCGKIFGAQS GLKRHVTVSH AKDHGDQPFT VVDEATAAAN KGKAGAGGRA RRASAVSNDF  540
AGLSEDEDDE LFEMRATNFT KGGGRGHRSD KDATEISTEE EDDDETIVRG KPTHGGIARF  600
TAGVAQDEDG DEDSEMLGVV AEATYKARAA TREAEAAIAD AKAADMDYEQ GGRAGRKRGA  660
ATPPAGRGRP KQKQKGNKGA ANAKNSADAK DAPKEKEVCE ICGKVFAAVQ GVPSHYKSHV  720
AKAEDAETKQ KAERALYQFQ QRIRDRREKA VVAARSGARA RREAEAEDED EDEDSPGGGA  780
NDAAPLVLNP SARNCSHCGQ GVRFSTQKDL ISHMWSEHKV VAISDPSLVG GGGNRGRASR  840
QASDGWDSGA AAAAAAAAIA AYPNDWIGGG GKNNALAFPG VDAGGTMTIS TGLVQSMISR  900
IDALEKTVAS LGYGGGNGNA NAGAIVASGG NGNAAAMQMH PFDAAAEIKR IPVRGARPGY  960
SPIVTFGRMV WLTGIVALQT VDQDVEGQTR QALEHMTLLL HKAGTDPTHL LRLNVYLADI  1020
RCADRMYKAW NEYFEGLGLS EGQRPVRITH EARLKNEGFR VEVHAEAVLP AK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	433	437	RPRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003055450.1	0.0	predicted protein
TrEMBL	C1MH90	0.0	C1MH90_MICPC; Predicted protein
STRING	XP_003055450.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5437	4	4

Link Out ? help Back to Top
Phytozome	50093
Entrez Gene	9680274

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]