PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 50111
Common NameMICPUCDRAFT_50111
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family ERF
Protein Properties Length: 398aa    MW: 41777.5 Da    PI: 9.9704
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
50111genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.55.7e-0778123150
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
            sg++GV++++  + + A++++ +    ++++ lg f +ae Aa++++aa+
  50111  78 SGFRGVSQKS-LNCYGASVYVSR---LNRNVFLGVFPSAELAARMYDAAA 123
            79*****766.9******88832...45*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.05E-1078137IPR016177DNA-binding domain
SMARTSM003805.4E-779142IPR001471AP2/ERF domain
PROSITE profilePS5103212.68179136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1180137IPR001471AP2/ERF domain
SMARTSM003808.9E-5191257IPR001471AP2/ERF domain
PROSITE profilePS5103210.56191251IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-7202251IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-8214252IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MPTFKHTGSP PPPSSPSAAA GDVDASAPPE VDDHYRNTIE QLKRDIDAAP PRPKDADGAA  60
GGKPTSSYPA TNQNNPRSGF RGVSQKSLNC YGASVYVSRL NRNVFLGVFP SAELAARMYD  120
AAATIVFGPD AYVNFPGSAT HEPPTGAQVA AMKLKVTGGR TASCKECGQE LPVKTRVCGR  180
CRAPVKFKDV PFKGVRVKLR GNNQPRYQAV FCLKGKVEFI GTFRTQEEAA RAYDARAREA  240
YGDEEGRTNF ATTAEADAAC EVGLRKLSAA GGDLAPIVTK RKSERKSDGD DSDDELELRR  300
RKKRRREEKA SGGGNGGGGN GGGGKGKGGG SGRGRRSNYY DRLLVSGGGG FVDADERAWG  360
GGAGNDLSST GGLDFSVAPP KQRKGGKSIA EQLLGSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279301KRKSERKSDGDDSDDELELRRRK
2298303RRRKKR
3299305RRKKRRR
4299306RRKKRRRE
5322329GGKGKGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003054924.10.0rav-like protein
TrEMBLC1MHA80.0C1MHA8_MICPC; Rav-like protein
STRINGXP_003054924.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1544822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.16e-10ERF family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]