PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 50114.m000014
Common NameLOC8265845, RCOM_1610140
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 230aa    MW: 25851.3 Da    PI: 6.9155
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
50114.m000014genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011224123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C+ C+k+F+++  L  H  +H
  50114.m000014  2 FECKACKKVFNSHQALGGHRASH 24
                   89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.3E-10226IPR007087Zinc finger, C2H2
SuperFamilySSF576672.48E-7224No hitNo description
SMARTSM003550.13224IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076229IPR007087Zinc finger, C2H2
PROSITE patternPS000280424IPR007087Zinc finger, C2H2
SuperFamilySSF576672.48E-779106No hitNo description
PfamPF139121.0E-1383107IPR007087Zinc finger, C2H2
SMARTSM003550.4484106IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.36984106IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MFECKACKKV FNSHQALGGH RASHKKVKGC FAARLDQGLD DSLADEDVIT HEEFFPTKSS  60
STFQFDHGSN PPLASTSKRK SKVHECSICH RVFSSGQALG GHKRCHWITS NSPDTSSLAK  120
FHQFQDHIEQ IQQRPKFTNT SETLDLSLDL NLPAPADHRD HNGVKRDPPA NQPSFKVSTE  180
IYLKTWVGVE AKEKDNNHQQ HQNEDDNKDN NNNNNCNGSM QNVEDEADSK
Cis-element ? help Back to Top
SourceLink
PlantRegMap50114.m000014
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002540465.21e-173zinc finger protein ZAT10, partial
TrEMBLB9RD611e-168B9RD61_RICCO; Uncharacterized protein
TrEMBLB9TQE61e-171B9TQE6_RICCO; Uncharacterized protein (Fragment)
STRINGXP_002511650.11e-168(Ricinus communis)
STRINGXP_002540465.11e-172(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF751188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.11e-26C2H2-like zinc finger protein