PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 51075
Common NameMICPUN_51075
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family ERF
Protein Properties Length: 417aa    MW: 45103.2 Da    PI: 10.3128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
51075genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.75.9e-0896140351
    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaark 51 
            y+G+  +k+ + W A+I +      +  +++ lg+f tae Aa++++aa+ 
  51075  96 YRGIQ-KKSENAWSASIFVT-----CldRQWMLGTFPTAELAAQMYDAAAH 140
            99995.7779*******995.....567*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-595158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-1495153IPR001471AP2/ERF domain
PROSITE profilePS5103213.65695152IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-1096153IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MIFGSDKFPA QEDLAGSRRS ARAVGGFPGL VASEAAGMAG DGSAMVAGRA QAGPEAGIDR  60
LAKEIEDLRD QIAAHHDPSK PKQKPQDSAR QQGGSYRGIQ KKSENAWSAS IFVTCLDRQW  120
MLGTFPTAEL AAQMYDAAAH VVFGDDACYN FPDAPNRDPP LATDVAREQL NRRPGKRTTC  180
AECGQECPVK NKNCFVCRTP LKAFNVMKGV QRRLLPGATR PKFMAVFSLG GRTTTLGTYW  240
TEEEAAYHYD REARTVHRDC DDPAKQRCNY PSLEAAKEAA DAALRKLEEE NGGPLPKIHP  300
KTKKNKIVKG GVAWRVVSSG AKPEDETKKK RRRDHSKAKA SKSGGKKGGA KKRKRAGDRD  360
GDGRLRRGVR AAKDAVKSGG LDLSVAFARK KMDVKSMLFG HLLDVDGTPS LGQTPA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1327332KKKRRR
2349355AKKRKRA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013280.0CP001328.1 Micromonas sp. RCC299 chromosome 7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002504025.10.0rav-like protein
TrEMBLC1EAX60.0C1EAX6_MICCC; Rav-like protein
STRINGXP_002504025.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1544822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.21e-08ERF family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]