PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 51845
Common NameMICPUCDRAFT_51845
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB_related
Protein Properties Length: 746aa    MW: 75641.9 Da    PI: 9.8045
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
51845genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-1698142147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT eE+e+++ a k++G   W++I +++g ++++ q++s+ qk+
            51845  98 RERWTDEEHERFLAALKLHGRA-WRKIEEHVG-TKSAVQIRSHAQKF 142
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-1692146IPR009057Homeodomain-like
PROSITE profilePS5129421.54993147IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-895145IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-1496145IPR006447Myb domain, plants
SMARTSM007178.8E-1397145IPR001005SANT/Myb domain
PfamPF002494.3E-1398141IPR001005SANT/Myb domain
CDDcd001672.33E-9100143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MSNPPPAWPG YAQAAAASGG FGPGVARIKP TPPVQQGALP ASNAAPWARG QTPPGGDATS  60
RGLGALSNAA TSNATQHAVA NVGHVPKARK PYTITKQRER WTDEEHERFL AALKLHGRAW  120
RKIEEHVGTK SAVQIRSHAQ KFFSKLMREA AKSGDASGVA SAGVSGSASE HGVSASVIPP  180
ARPKRKPAHP YPRKAPEGGD RAKNATTMSG DRRTVSTDGG TRTEVSDGTI TGADVNSFAA  240
FGHGAFGHGG FDAAHAAALA SSYAQFPAAP AAGPAAGATN AASYFNPYLL PANPTAAMYQ  300
MNAALKGATN ATTPRAANAT TDDAAQAAAM RRFMHAFQGL TGMPAAMTAP AAPPPPAPQP  360
GPPQPGPAAH GGGGAAAAGA NPSAATDFFA AMMAAATSNA SANLGSAESA FSQWAAAAAA  420
QQQSNTAQAQ QAAAMSQMMM MMMPGYAQAA AAVATAAGGA AAANPNPNPN QNPNADADAD  480
ANANLQSLAD FAVKQHRPRE FEEPQPVAEK KPEFDFNAVA ARKARSTRAH PKAAAAARAS  540
AEPPFPPAST AANDDASDPA SEGDLNKESS PENDGSRPSS HERGGASGSG EEDERDATAA  600
ARGGGGGETA SHTTPFAWCT PFLKDFSRRH SSPALPFQRL TGGGGGATTD AKTINTSGSN  660
ESTQLHADGE RGANHHRGRG GAGANAGAGK SQDNFELCAD MSSRRELSPS SEEGGEDHNQ  720
KSHSRPPPAA RLKLSTQTRN ARSRA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0891405e-53KR089140.1 Micromonas pusilla isolate 1545_2 NADH dehydrogenase gene, partial cds.
GenBankKR0892015e-53KR089201.1 Micromonas pusilla isolate 1545_1 NADH dehydrogenase gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003062228.10.0predicted protein
TrEMBLC1N2460.0C1N246_MICPC; Predicted protein
STRINGXP_003062228.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4541427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-31MYB_related family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]