PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 51893
Common NameMICPUCDRAFT_51893
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C2H2
Protein Properties Length: 211aa    MW: 22977.8 Da    PI: 9.4729
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
51893genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00069627223
             EETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
             +C+ Cg +F  +  L  H ++H
    51893  6 QCETCGARFYYPAKLAEHANVH 27
             7*****************9998 PP
2zf-C2H213.90.000163357123
             EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
             ++C+   C + F++++ L++H ++H
    51893 33 FRCEhdGCEEAFPTRDRLRTHAQKH 57
             89********************999 PP
3zf-C2H216.52.3e-05118142123
              EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
              + Cp   Cgk F++     +H rtH
    51893 118 HACPheGCGKAFKTEKAVASHARTH 142
              579999******************9 PP
4zf-C2H213.40.00022148173123
              EEET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
              y+C+   C + Fs++ ++ rH  + H
    51893 148 YRCTfgACERAFSSQGEFSRHRIKtH 173
              899999***************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003553.8527IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.572532IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.5E-7633IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576671.78E-101470No hitNo description
SMARTSM003558.5E-43357IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1383362IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.3E-63457IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002803557IPR007087Zinc finger, C2H2
SuperFamilySSF576672.62E-13103151No hitNo description
Gene3DG3DSA:3.30.160.601.8E-14105141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.69118147IPR007087Zinc finger, C2H2
SMARTSM003550.0019118142IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120142IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-11142173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.09E-6142174No hitNo description
PROSITE profilePS501579.847148173IPR007087Zinc finger, C2H2
SMARTSM003550.015148173IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280150173IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDDYPQCETC GARFYYPAKL AEHANVHSGT TPFRCEHDGC EEAFPTRDRL RTHAQKHDAK  60
HECALCGKRF QTAGASRRST RVQRLNDRRV APRVRPSLAS PSRVLRSHAM THTTSRPHAC  120
PHEGCGKAFK TEKAVASHAR THTGEKPYRC TFGACERAFS SQGEFSRHRI KTHGVRLRNA  180
QPAAGVGDVG GGFVGVGVGA DEVLVAGVCE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-18716924181Aart
2i13_B1e-18716924181Aart
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003062250.11e-153predicted protein
TrEMBLC1N2901e-151C1N290_MICPC; Predicted protein
STRINGXP_003062250.11e-152(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.13e-14C2H2 family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]