PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

52141

Common Name

MICPUCDRAFT_52141

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

C3H

Protein Properties

Length: 460aa MW: 49566.8 Da PI: 7.7857

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
52141	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33	1e-10	17	40	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + Cr+++r C yGd+CkFaH+p 52141 17 ATCRHWLRARACLYGDSCKFAHPP 40 57********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.746	13	41	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.2E-4	13	40	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.24E-6	17	42	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.3E-7	18	42	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-7	18	40	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.40.50.150	3.6E-4	84	129	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MTTAAAEGRE SPSRAPATCR HWLRARACLY GDSCKFAHPP DDAARSSVDD VESCRRPNGD 60 GDGSTRRRRR RSRVRKRGKC GFMRRFLLDT YGVETLQSGV VVDVGGGRGE LSFELENLND 120 VRCVVVDPQP LKVSRLEAKL RGGWYHRTAP LQRYNTRDAE GTARDGDEGG DDDRTGAGAG 180 AAARRPAHWR LLWSPSLWSG DVGPTRTSVY RAWAAARTVR FFESGSGKET RAAAAAGGGG 240 GAHDASSALV SRALKRLDDA DVDVETARPR RPNDDTDAAA DDDERCECGG RDDPSTTPEG 300 VRPRDEVLKE RRSPRERGRM GTSHDDAAAA CDAFPPDAAC DAFPPDAATV AAALASCSIL 360 VGMHPDQATE WIVDYALEHR KPFAVVPCCV CPTAFPRRRT SAGGAVITHD DFVAYLTRKG 420 EDGEIASARL GFEGKDVVVY STYGRRGGRE DSARSQRGG*

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MTTAAAEGRE SPSRAPATCR HWLRARACLY GDSCKFAHPP DDAARSSVDD VESCRRPNGD  60
GDGSTRRRRR RSRVRKRGKC GFMRRFLLDT YGVETLQSGV VVDVGGGRGE LSFELENLND  120
VRCVVVDPQP LKVSRLEAKL RGGWYHRTAP LQRYNTRDAE GTARDGDEGG DDDRTGAGAG  180
AAARRPAHWR LLWSPSLWSG DVGPTRTSVY RAWAAARTVR FFESGSGKET RAAAAAGGGG  240
GAHDASSALV SRALKRLDDA DVDVETARPR RPNDDTDAAA DDDERCECGG RDDPSTTPEG  300
VRPRDEVLKE RRSPRERGRM GTSHDDAAAA CDAFPPDAAC DAFPPDAATV AAALASCSIL  360
VGMHPDQATE WIVDYALEHR KPFAVVPCCV CPTAFPRRRT SAGGAVITHD DFVAYLTRKG  420
EDGEIASARL GFEGKDVVVY STYGRRGGRE DSARSQRGG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	72	RRRRRRSR
2	66	78	RRRRRSRVRKRGK
3	69	75	RRSRVRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003062364.1	0.0	predicted protein
TrEMBL	C1N3E3	0.0	C1N3E3_MICPC; Predicted protein
STRING	XP_003062364.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP348	8	11

Link Out ? help Back to Top
Phytozome	52141
Entrez Gene	9687804

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]