PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 52220
Common NameMICPUCDRAFT_52220
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family AP2
Protein Properties Length: 560aa    MW: 58299 Da    PI: 8.1063
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
52220genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.95.2e-13270333155
    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse..ng.....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
            s+++GV+ ++++gr++A+++d  se  n      ++ k+++lg + +++eAa+a+++a+ k++g
  52220 270 SKFRGVTKHRWTGRFEAHLWDsASErtNAkpggrRKgKQVYLGGYASEKEAARAYDKAAIKYWG 333
            79*******************8888853388886337**********99************987 PP
2AP249.21.3e-15376428156
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
            s+++GV+++++ grW+A+I  +     +++ +lg+f ++eeAa+ +++a+++++g+
  52220 376 SKFRGVTRHHQHGRWEARIGRVLG---NRYLYLGTFSSEEEAARSYDKAALRYRGP 428
            79****************988422...5**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-14270341IPR016177DNA-binding domain
PfamPF008472.8E-10270333IPR001471AP2/ERF domain
CDDcd000185.47E-16270341No hitNo description
PROSITE profilePS5103217.833271341IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-14271341IPR001471AP2/ERF domain
SMARTSM003809.8E-24271347IPR001471AP2/ERF domain
PRINTSPR003673.4E-5272283IPR001471AP2/ERF domain
CDDcd000181.50E-20376434No hitNo description
PfamPF008474.0E-11376427IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-16376436IPR016177DNA-binding domain
PROSITE profilePS5103218.162377435IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-17377435IPR001471AP2/ERF domain
SMARTSM003802.1E-29377441IPR001471AP2/ERF domain
PRINTSPR003673.4E-5417437IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MDASSDPFGW LCDDPDDRGA RVDRDARAHD LAFALGLSPL PTAAPFPAPL GLGSLASSLD  60
ADDDDGDGDD DAWRAIARSL LLEDATPPLA SPSASGGGGD RDAPLPWSED ARGDGLLLEL  120
DATRVASPTT FGGLDPCELG VAMTRVLSVA KTETLLASMS AKKELASEGG GGAGAGGKKF  180
GSAARAAVHS LLASAARADP AAAASAQTAA EPPGDATRGD VSSGGFGGPD ENPPPKPKPK  240
PKLKPKPKRA LPPPPRSNKP PGVIPPGRSS KFRGVTKHRW TGRFEAHLWD SASERTNAKP  300
GGRRKGKQVY LGGYASEKEA ARAYDKAAIK YWGDAAHLNF DRGDYVEDMR HITTLTTAAL  360
VASLRRSSSG FSRGASKFRG VTRHHQHGRW EARIGRVLGN RYLYLGTFSS EEEAARSYDK  420
AALRYRGPKA VTNFGRSEYS VAEIASMPLP LPLPLPRASS EGAAAVDAVA VAEKNAYATA  480
AAAAAAGGVL VLASKAATAT ELAGGFASHP LDSAVVVRRM RTRDSECDSH ITSLSLNFEG  540
WADAPPATRA RDDANDETV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003062396.10.0ant-like protein
TrEMBLC1N3L60.0C1N3L6_MICPC; Ant-like protein
STRINGXP_003062396.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.12e-54AP2 family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]