PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 5242
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 237aa    MW: 26759.8 Da    PI: 5.4985
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
5242genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.4e-10100125126
              --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
              yk  +C+++ +tG+C  Gd CkF H+
     5242 100 YKPDICKDYKQTGFCGWGDACKFLHD 125
              899**********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.24E-997131IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-699126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.67199127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-13100131IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-8100125IPR000571Zinc finger, CCCH-type
PfamPF139202.5E-6175220No hitNo description
SuperFamilySSF578501.84E-10176221No hitNo description
Gene3DG3DSA:3.30.40.102.0E-10176222IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001621.28E-4177217No hitNo description
SMARTSM001843.3E-5177217IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.114177218IPR001841Zinc finger, RING-type
PROSITE patternPS005180195204IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
FAFEGSKTVR ARGDMGATAE LEIDTSKEMD GRAMREQVLK QAIDRADGFE DDKKYRGTNA  60
YVDYRAGFRR EQTISSEKGR GAHGPMRAAT NIRSTFVMDY KPDICKDYKQ TGFCGWGDAC  120
KFLHDRGDYK QGWQLDKDWE QKEQARKAAE ARMAKLGEDG VAEESDEEYV NDIPESCAIC  180
DTSWLEAKFP VATACGHFFC ERCALQHNAK QTTCFTCDKE TGGTFNAAKE IIKRVKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-54123798319RING finger protein 113A
5z58_M1e-54123798319RING finger protein 113A
6ff4_t1e-54123798319RING finger protein 113A
6ff7_t1e-54123798319RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005920.0CP000592.1 Ostreococcus lucimarinus CCE9901 chromosome 12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001420631.11e-177predicted protein, partial
SwissprotQ8GX847e-80C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
SwissprotQ9FNG62e-79C3H51_ARATH; Zinc finger CCCH domain-containing protein 51
TrEMBLA4S5L81e-175A4S5L8_OSTLU; Uncharacterized protein (Fragment)
STRINGABO989241e-176(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP14831616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.14e-76C3H family protein