PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 52743
Common NameMICPUCDRAFT_52743
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family GATA
Protein Properties Length: 728aa    MW: 75944.5 Da    PI: 8.6543
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
52743genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.54.3e-14104134131
   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyr 31 
            C nC+  kTp+WR gp g++tLCnaC+ + r
  52743 104 CFNCRRQKTPQWRPGPAGPRTLCNACWSRVR 134
            ***************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011410.31798129IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-798146IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.8E-10100133IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.62E-9101134No hitNo description
CDDcd002029.01E-11103134No hitNo description
PROSITE patternPS003440104129IPR000679Zinc finger, GATA-type
PfamPF003201.8E-11104134IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MKRRRPQPRI ATKGTTSGGG GAVRSSDDVP LARASAPLGE RDAVVQSGDG DDDAVADSND  60
SPVSTAAAPP SSQSADDGAR AAAAIPPLDP SGDGDLAPCA GKVCFNCRRQ KTPQWRPGPA  120
GPRTLCNACW SRVRAAAPEY KEKEKERLAA LHIVRMAEPE FKEKKKKQDT AYRAEPGSKE  180
KQKKRDDARA AAPGSKEKKK KQDDARRANE LREIVAAAKA ALAPSSLAPS SLAPSSLATV  240
VSNVGGVRSA ESAATAKTTS ATRADADSNK ENIVPTPSVR VIRPSGAGSD TTAAIVRVDH  300
AKAATPPKSL AGFGDQLMAQ RGVGGDERFR RNVTLVEDES GSWIPLMTKK DGKTPSGVFA  360
VQRECYGLDP PTEDGAEKLN VFIAGFCSKL ADEGWQISSN TYILFGCAAA DRLRVDVSWA  420
LTRTVTTFRE ARRVCDDAAG NRLDEIKLLN NEFIADTTNF LAAVGDVINT SDAGLSDDAR  480
ASLIAGLEEA KAVVKAVVDE GVSVSAAAGA GIASGAGVAS GASGAGVASG TNGLSSPASS  540
LTPAGPIARK KLGVMLAEVR VLEKKAVILK TLAEGGEDKT LTNKRNSLQS AVDAVARARA  600
ADVLDDHTEL GLSTGSTSAT HEDKKSYACR LKVMLYAEVS CTCGIYVHAI GKKFDVLKFA  660
PQSAVGDMYV MTKALSRGDY KHRSASCGEH VSLMIDLEDN GDCSVAHAEK FARAANKAYG  720
ACAHLLR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182200KKRDDARAAAPGSKEKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003063085.10.0predicted protein
TrEMBLC1N5020.0C1N502_MICPC; Predicted protein
STRINGXP_003063085.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2201430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-10GATA transcription factor 9
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]