PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 53189
Common NameMICPUN_53189
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C2H2
Protein Properties Length: 431aa    MW: 46370 Da    PI: 6.9067
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
53189genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.1e-05273290623
              TTEEESSHHHHHHHHHHT CS
  zf-C2H2   6 CgksFsrksnLkrHirtH 23 
              Cg++F +++ L+ H+++H
    53189 273 CGRCFDTPYKLEDHMNLH 290
              ****************99 PP
2zf-C2H2157.1e-05296320123
              EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
              + C+   Cg  Fs++  L +H +tH
    53189 296 FACTvpGCGAAFSNRTALSKHKKTH 320
              678888******************9 PP
3zf-C2H215.55.1e-05324348123
              EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
              + Cp   C+  Fs+ ++LkrH  tH
    53189 324 FACPapGCNLAFSNAYDLKRHSVTH 348
              789999***************8888 PP
4zf-C2H219.92e-06354376123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              + C+ Cgk+F+    L  H+r+H
    53189 354 FACKTCGKTFKLENALIAHQRVH 376
              78*******************99 PP
5zf-C2H216.91.8e-05382406123
              EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
              +kC+   Cgk F  k +L+rH rtH
    53189 382 FKCEhpGCGKLFGYKVDLQRHERTH 406
              89**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-4256286IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.21268290IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.528268295IPR007087Zinc finger, C2H2
SuperFamilySSF576671.53E-10269320No hitNo description
PROSITE patternPS000280270290IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-16287323IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.7E-4296320IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.528296325IPR007087Zinc finger, C2H2
PROSITE patternPS000280298320IPR007087Zinc finger, C2H2
SuperFamilySSF576676.47E-14306363No hitNo description
SMARTSM003550.012324348IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-8324351IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.695324353IPR007087Zinc finger, C2H2
PROSITE patternPS000280326348IPR007087Zinc finger, C2H2
SuperFamilySSF576672.11E-15352406No hitNo description
Gene3DG3DSA:3.30.160.605.2E-13352375IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0023354376IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.874354381IPR007087Zinc finger, C2H2
PROSITE patternPS000280356376IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-16376410IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.7E-4382406IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.191382411IPR007087Zinc finger, C2H2
PROSITE patternPS000280384406IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGDDEDEEFD EHEDDGFNDP RQTERAPKDV TDELAHFTRE EARTQEKNAS LVDRGQTEAS  60
QAVETAFDAL AAYGVSGSPV SPSALSAFGL TSAPGSGNAW LQSGMSPPSP GAVAAAAAAA  120
AVSAYGSLSS PSGKSRFAFE KPVTGSLTAE VEAAVATDMN EQHGLANTMD ETTTTAGMPP  180
ARRAPVTWSD DAFKVPAPKP KSALLNTEED PKLKNALVLA RKDWMELTVS EVQEILKAVK  240
TLIGRRRAPA AKKKSQEEIL LHEDVERNKC IACGRCFDTP YKLEDHMNLH TGNQPFACTV  300
PGCGAAFSNR TALSKHKKTH SKEFACPAPG CNLAFSNAYD LKRHSVTHSD ERPFACKTCG  360
KTFKLENALI AHQRVHTGEK KFKCEHPGCG KLFGYKVDLQ RHERTHQGQK AKPSKLPSGT  420
LGELPRGVID *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A7e-3226941715188Aart
2i13_B7e-3226941715188Aart
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015750.0CP001575.1 Micromonas sp. RCC299 chromosome 8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002508356.10.0predicted protein
TrEMBLC1FGW30.0C1FGW3_MICCC; Uncharacterized protein
STRINGXP_002508356.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.19e-18relative of early flowering 6
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]