PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

53546

Common Name

MICPUCDRAFT_53546

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

HB-other

Protein Properties

Length: 1296aa MW: 140112 Da PI: 10.0953

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
53546	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.1	4.6e-11	89	136	7	53
--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRa 53 +++eq +++e+ + yps+e++ ++A++ gLt +qV +WF+N+R+ 53546 89 HSEEQRAIMQEFWKTkGAYPSQEQKDDMAERSGLTNNQVHNWFHNQRT 136 689*********879****************************7 PP
2	zf-CCCH	17	1e-05	932	955	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t Crff C+ Gd+C F+Hg 53546 932 TTACRFFNTRRGCRDGDKCMFSHG 955 778********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	6.4E-5	82	145	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-10	88	145	IPR009057	Homeodomain-like
Pfam	PF00046	1.8E-8	89	136	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-12	89	139	IPR009057	Homeodomain-like
CDD	cd00086	8.28E-8	90	141	No hit	No description
PROSITE profile	PS50071	11.855	90	141	IPR001356	Homeobox domain
SMART	SM00719	2.7E-5	501	616	IPR004343	Plus-3 domain
SuperFamily	SSF159042	2.22E-11	502	617	IPR004343	Plus-3 domain
Pfam	PF03126	3.8E-15	506	610	IPR004343	Plus-3 domain
Gene3D	G3DSA:3.30.1370.10	3.4E-9	820	894	IPR004088	K Homology domain, type 1
PROSITE profile	PS50084	11.867	821	892	IPR004088	K Homology domain, type 1
CDD	cd00105	1.34E-4	823	888	No hit	No description
Pfam	PF00013	7.8E-5	823	889	IPR004088	K Homology domain, type 1
SuperFamily	SSF54791	1.9E-8	823	903	IPR004088	K Homology domain, type 1
PROSITE profile	PS50103	13.385	929	957	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0054	929	956	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.7E-4	932	956	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.66E-5	935	955	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF55277	1.03E-8	1236	1285	IPR003169	GYF domain
PROSITE profile	PS50829	10.574	1240	1295	IPR003169	GYF domain
Gene3D	G3DSA:3.30.1490.40	1.1E-8	1242	1288	IPR003169	GYF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003723	Molecular Function	RNA binding
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1296 aa Download sequence Send to blast
MIAAKFGLDA DALVKMNKKH LRLLDLDSRL KPMTRLWLTE DPRTPPPKKQ KKEAPAAAAA 60 TAAAAAPAPA PVGAPQHTKS VPGLGWRMHS EEQRAIMQEF WKTKGAYPSQ EQKDDMAERS 120 GLTNNQVHNW FHNQRTAYAK KGWDIPREGG EGEAKPSKRR VKTAKTKTKT KEEIEGLFGE 180 SDSDDDGDTA TNAFWAKFDS ERGNKATTAQ SGRPTEGAQG DARGQGGAGR VPERARAPSP 240 PPRAAMPKPK PAPAVRAPAA IEISSDDDDE VSIMAEHRAA KVNKRTQEAG FAAGPWATDA 300 LQDLLAEEGY SRTKADHNIL IKVVWGRINA KKDVYDKKKS LIDAKNDPIL WRIFGEKPLR 360 ATTMPIPMVV SKVISAHVRK KNEPLPAACE PGWRKDIEGG DSGGFKIPKA AAGLKDLRDD 420 FGDIGNGDGD GSDDDDHRRR RGGAAGSKSA MALIREKQKQ RRLREKEAAA AAKPNAGWDS 480 GADSDGERGS PAPHEQRRYA AVTRHNVELV YLTRVAAASL LHLDEDTFDE VTVMSYVRFK 540 CKQLANGEAH YRLVQVNRIE HGDEYEVNPG TPDTPKTTRW LVCNNMGTEK TLALADISNA 600 RFTDQELAKL GEFINDGVLM RWAVRGLQHL HKRMIDHMPE DTRARLQKLH GLRNKASAEG 660 NFHAKKRLNA EIKELEAGTL ERDRCKTPDV DVEPGSGGGG VAAEGPGGGG RGGSRWAIPT 720 LGDLAGFGER RGGGGGGGGG VGGPGPARRE DPWGGGGGGG GGGGGEGRIS RPAAGPSAAE 780 RPASRSFSGR FAEGDGARAS PRDDDDGGDA FGDERRAAPR EETRRLEVSA DVARNIVGVT 840 AAAVKQLQDR TGATVQVSRV DRGEHDDGNR SVVISGAWPC VDAAVEEVRR VMSKYQPRNR 900 DRDRERDRDR GRKRDRSPDA SPPSSSKRGR STTACRFFNT RRGCRDGDKC MFSHGDGASP 960 ARVRSPPRGG VLTSESPRRR TARGWGARSP RDEETRRRSL CERAITTLLD IIERKGGRLY 1020 ATGMTQLYQA MPEAKDVVGK LANRNLSEFC EDSNGRLTYV NGKNGHKSSF IVAGKASRPG 1080 SSPRKRSRGA ADDLEKVIRT LYDIVTKHGG RMKSGPAGQR LYGYGAVMPE AKDIIDANFR 1140 SNKMHNVCKA SKGRLTFESD GQDGVITARE KGLEGEKPAP VADDGGGWGH GANANRTETT 1200 EVPPPPRDPR DPRTRDAERE VPSPPVIAAA AAPSDASEEE KVWMYADPDG VIQGPFKKKS 1260 FRKWVASGAM PESTIAWHRD SNASTGVPVA SFLAS*

Sequence ? help Back to Top

Protein Sequence Length: 1296 aa Download sequence Send to blast

MIAAKFGLDA DALVKMNKKH LRLLDLDSRL KPMTRLWLTE DPRTPPPKKQ KKEAPAAAAA  60
TAAAAAPAPA PVGAPQHTKS VPGLGWRMHS EEQRAIMQEF WKTKGAYPSQ EQKDDMAERS  120
GLTNNQVHNW FHNQRTAYAK KGWDIPREGG EGEAKPSKRR VKTAKTKTKT KEEIEGLFGE  180
SDSDDDGDTA TNAFWAKFDS ERGNKATTAQ SGRPTEGAQG DARGQGGAGR VPERARAPSP  240
PPRAAMPKPK PAPAVRAPAA IEISSDDDDE VSIMAEHRAA KVNKRTQEAG FAAGPWATDA  300
LQDLLAEEGY SRTKADHNIL IKVVWGRINA KKDVYDKKKS LIDAKNDPIL WRIFGEKPLR  360
ATTMPIPMVV SKVISAHVRK KNEPLPAACE PGWRKDIEGG DSGGFKIPKA AAGLKDLRDD  420
FGDIGNGDGD GSDDDDHRRR RGGAAGSKSA MALIREKQKQ RRLREKEAAA AAKPNAGWDS  480
GADSDGERGS PAPHEQRRYA AVTRHNVELV YLTRVAAASL LHLDEDTFDE VTVMSYVRFK  540
CKQLANGEAH YRLVQVNRIE HGDEYEVNPG TPDTPKTTRW LVCNNMGTEK TLALADISNA  600
RFTDQELAKL GEFINDGVLM RWAVRGLQHL HKRMIDHMPE DTRARLQKLH GLRNKASAEG  660
NFHAKKRLNA EIKELEAGTL ERDRCKTPDV DVEPGSGGGG VAAEGPGGGG RGGSRWAIPT  720
LGDLAGFGER RGGGGGGGGG VGGPGPARRE DPWGGGGGGG GGGGGEGRIS RPAAGPSAAE  780
RPASRSFSGR FAEGDGARAS PRDDDDGGDA FGDERRAAPR EETRRLEVSA DVARNIVGVT  840
AAAVKQLQDR TGATVQVSRV DRGEHDDGNR SVVISGAWPC VDAAVEEVRR VMSKYQPRNR  900
DRDRERDRDR GRKRDRSPDA SPPSSSKRGR STTACRFFNT RRGCRDGDKC MFSHGDGASP  960
ARVRSPPRGG VLTSESPRRR TARGWGARSP RDEETRRRSL CERAITTLLD IIERKGGRLY  1020
ATGMTQLYQA MPEAKDVVGK LANRNLSEFC EDSNGRLTYV NGKNGHKSSF IVAGKASRPG  1080
SSPRKRSRGA ADDLEKVIRT LYDIVTKHGG RMKSGPAGQR LYGYGAVMPE AKDIIDANFR  1140
SNKMHNVCKA SKGRLTFESD GQDGVITARE KGLEGEKPAP VADDGGGWGH GANANRTETT  1200
EVPPPPRDPR DPRTRDAERE VPSPPVIAAA AAPSDASEEE KVWMYADPDG VIQGPFKKKS  1260
FRKWVASGAM PESTIAWHRD SNASTGVPVA SFLAS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	905	915	RDRDRGRKRDR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003063666.1	0.0	predicted protein
TrEMBL	C1N740	0.0	C1N740_MICPC; Predicted protein
STRING	XP_003063666.1	0.0	(Micromonas pusilla)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	4e-09	nucleic acid binding;zinc ion binding;DNA binding

Link Out ? help Back to Top
Phytozome	53546
Entrez Gene	9689277

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]