PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

53806

Common Name

MICPUCDRAFT_53806

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

HB-other

Protein Properties

Length: 705aa MW: 73389.7 Da PI: 6.3387

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
53806	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.2	6.5e-09	616	649	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 +++ p++ee++eLA+k+gLt +qV WF N Ra+ 53806 616 RKPVPTREEKRELAAKTGLTPQQVGDWFVNARAR 649 5789*****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.1E-4	587	657	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.15E-11	589	656	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.0E-20	590	656	IPR009057	Homeodomain-like
CDD	cd00086	1.02E-9	592	653	No hit	No description
PROSITE profile	PS50071	11.094	605	653	IPR001356	Homeobox domain
Pfam	PF05920	2.1E-10	615	649	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence Send to blast
MTAHEHDASV VEVKLLLPSG ANADADAARA RAGARIPGEL KGVVFDFDIA AGFAAATCEK 60 IKKIGGDPRP PPSDDARNRR SSTASDASQA SASDLAFDDA PLPNGGGADD DCWDALLSAF 120 ESHVRGGGDG DGDGDADGAS ATAMEFDVDD ASIYCGSSFQ AAASALHPPR DVGLGYDNAH 180 AADVFADIFD DACDAFGSPG GGGGARGDFH DALFSTWPAT DNATNDSIDN IMMYPNSTTH 240 HTNNATNATV TNALTNDAVA THASSVLRSL VFGGSGDDDV GKHGGARVRK SKSAAKREQR 300 QRQQQQQHTS PDRFTTTAQR SSLERLHPQR WRDAADARSA SRAIKTRADE LARATSTRRA 360 KDIERVVRAF TIELTRLDAA EEDVLHKTLA RSVSSGGETA GSEVLRAVRE DAVNAARTRR 420 VPFCECRFKL LDRFVEDVEA TAAFGGAAAA TTTTTRASSL EPIRPAAAAA AARPFKSPSS 480 AAPRGLGLGL GPGDALALDS AGGVRRSHSQ TWTHLAKVGT PPTKRSARDE VVLGAPADAD 540 ADDDADAKSK SSPSPSPSPS PSPRLSFLPA TPATPPPRNN GGGGGGGGKN GRHSKKAKAI 600 LHEWLWDHFY PTAERRKPVP TREEKRELAA KTGLTPQQVG DWFVNARARL WKPYIEGLVR 660 GVCDEMQTQP EGEAAAPAAA AAAAAAGGGS CEGGFGAMLR GSLE*

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence Send to blast

MTAHEHDASV VEVKLLLPSG ANADADAARA RAGARIPGEL KGVVFDFDIA AGFAAATCEK  60
IKKIGGDPRP PPSDDARNRR SSTASDASQA SASDLAFDDA PLPNGGGADD DCWDALLSAF  120
ESHVRGGGDG DGDGDADGAS ATAMEFDVDD ASIYCGSSFQ AAASALHPPR DVGLGYDNAH  180
AADVFADIFD DACDAFGSPG GGGGARGDFH DALFSTWPAT DNATNDSIDN IMMYPNSTTH  240
HTNNATNATV TNALTNDAVA THASSVLRSL VFGGSGDDDV GKHGGARVRK SKSAAKREQR  300
QRQQQQQHTS PDRFTTTAQR SSLERLHPQR WRDAADARSA SRAIKTRADE LARATSTRRA  360
KDIERVVRAF TIELTRLDAA EEDVLHKTLA RSVSSGGETA GSEVLRAVRE DAVNAARTRR  420
VPFCECRFKL LDRFVEDVEA TAAFGGAAAA TTTTTRASSL EPIRPAAAAA AARPFKSPSS  480
AAPRGLGLGL GPGDALALDS AGGVRRSHSQ TWTHLAKVGT PPTKRSARDE VVLGAPADAD  540
ADDDADAKSK SSPSPSPSPS PSPRLSFLPA TPATPPPRNN GGGGGGGGKN GRHSKKAKAI  600
LHEWLWDHFY PTAERRKPVP TREEKRELAA KTGLTPQQVG DWFVNARARL WKPYIEGLVR  660
GVCDEMQTQP EGEAAAPAAA AAAAAAGGGS CEGGFGAMLR GSLE*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003064142.1	0.0	predicted protein
TrEMBL	C1N7S1	0.0	C1N7S1_MICPC; Predicted protein
STRING	XP_003064142.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP7222	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75430.1	2e-13	BEL1-like homeodomain 11

Link Out ? help Back to Top
Phytozome	53806
Entrez Gene	9689583

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]