PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

54033

Common Name

MICPUCDRAFT_54033

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

C2H2

Protein Properties

Length: 396aa MW: 42661.7 Da PI: 6.5139

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
54033	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00047	114	134	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC+ Cg+sF +++ ++rH ++ 54033 114 KCERCGRSF-NPDAYTRHAARC 134 7******.******9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13913	4.0E-5	7	30	No hit	No description
Pfam	PF13913	1.4E-7	112	134	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MTSKPRLLTC YVCAREYGTK SIAIHIPQCR RTFEAREALK RDARDRRRCP DPPPGYMDLI 60 DAIGASRSLG ETLAAASLTP PSPGSLSTRA KGSLVVDAIN DAAYRRWSDE VLRKCERCGR 120 SFNPDAYTRH AARCAGKGLS PARRSARAAA SRGGKVVDVG TKVAAKPRSP AKAPRARTIA 180 FDDDDDDDEV CGDSGDDAGD DAGDDSARCA SDEDAPHGRP VLSGVALDTT HAPSLGAVRV 240 YENEDWYLAR VSVPDCDDER FVVEISNGDR GDRAEIVVEG VVTGAADGAV ERAVPVSISN 300 PGVCVDSYFT PVLGPGTYLP ELPNPGRWSR KFALPGPVVL ELRDVDGRLP PGETRTHYKI 360 VHQQSRTLEL YFWKEKPSDV LSPVRSPGVD RGFFA*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MTSKPRLLTC YVCAREYGTK SIAIHIPQCR RTFEAREALK RDARDRRRCP DPPPGYMDLI  60
DAIGASRSLG ETLAAASLTP PSPGSLSTRA KGSLVVDAIN DAAYRRWSDE VLRKCERCGR  120
SFNPDAYTRH AARCAGKGLS PARRSARAAA SRGGKVVDVG TKVAAKPRSP AKAPRARTIA  180
FDDDDDDDEV CGDSGDDAGD DAGDDSARCA SDEDAPHGRP VLSGVALDTT HAPSLGAVRV  240
YENEDWYLAR VSVPDCDDER FVVEISNGDR GDRAEIVVEG VVTGAADGAV ERAVPVSISN  300
PGVCVDSYFT PVLGPGTYLP ELPNPGRWSR KFALPGPVVL ELRDVDGRLP PGETRTHYKI  360
VHQQSRTLEL YFWKEKPSDV LSPVRSPGVD RGFFA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003064244.1	0.0	predicted protein
TrEMBL	C1N8C4	0.0	C1N8C4_MICPC; Predicted protein
STRING	XP_003064244.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP7787	5	6

Link Out ? help Back to Top
Phytozome	54033
Entrez Gene	9689499

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]