PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 54495
Common NameMICPUCDRAFT_54495
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family HB-other
Protein Properties Length: 156aa    MW: 18112.2 Da    PI: 12.1461
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
54495genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.56.1e-104191757
              --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
  Homeobox  7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
               t++  ++Le ++e ++ p a++ ++LA++l+L+   V++WF  rR  +k+
     54495 41 VTEHHKKILEGVYELEPRPPARTEARLARQLDLDVVAVSTWFRTRRRVDKR 91
              68999*****************************************87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.7913292IPR001356Homeobox domain
SMARTSM003895.7E-43396IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-73591IPR009057Homeodomain-like
SuperFamilySSF466894.28E-93893IPR009057Homeodomain-like
PfamPF000461.4E-74191IPR001356Homeobox domain
PROSITE patternPS0002706790IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MTSKAGAIDA AYLSSDDASK RMRRRHFLGE VQRIKARQSG VTEHHKKILE GVYELEPRPP  60
ARTEARLARQ LDLDVVAVST WFRTRRRVDK RRDMRFVGIL FFLIVFAVLL AVYWRVLLTL  120
VPIRPRWRGE RDSLRTSPGA SLRPPLAFNP RHRRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003064448.11e-107predicted protein
TrEMBLC1N9G41e-106C1N9G4_MICPC; Predicted protein
STRINGXP_003064448.11e-106(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP929455
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]