PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 55072.m000012
Common NameRCOM_2112360
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bZIP
Protein Properties Length: 101aa    MW: 11715.6 Da    PI: 10.5986
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
55072.m000012genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.81.2e-134288147
                   XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1  1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47
                   e e ++er+k+kNR +A rsR++K ++++ Leekv+eL +eN ++  
  55072.m000012 42 EDEMRKERKKIKNRASAARSREKKVERTKFLEEKVEELREENAQMER 88
                   56899*************************************98874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000436.6E-53151IPR002112Transcription factor Jun
Gene3DG3DSA:1.20.5.1702.7E-134093No hitNo description
PfamPF001705.9E-114289IPR004827Basic-leucine zipper domain
SMARTSM003388.4E-64295IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.8524493IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.83E-104593No hitNo description
PROSITE patternPS0003604964IPR004827Basic-leucine zipper domain
PRINTSPR000436.6E-55369IPR002112Transcription factor Jun
PRINTSPR000436.6E-57183IPR002112Transcription factor Jun
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MPISGAGTSM RREVEVSHGI MIPSNMIVNH GGRKRIIEGS EEDEMRKERK KIKNRASAAR  60
SREKKVERTK FLEEKVEELR EENAQMERLV KLLVIHAPFF V
Cis-element ? help Back to Top
SourceLink
PlantRegMap55072.m000012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002537820.22e-58jun dimerization protein 2, partial
TrEMBLB9THV13e-64B9THV1_RICCO; Uncharacterized protein
STRINGXP_002537820.15e-65(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2705923