PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 55167
Common NameMICPUCDRAFT_55167
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family ERF
Protein Properties Length: 236aa    MW: 27123.7 Da    PI: 10.3291
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
55167genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2331.5e-10123167150
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
            s+y+GV++   + rW+A+ r    ng  k  slg f+ +eeAa+a+++++
  55167 123 SRYRGVHQTFPTRRWEAQFRR---NG--KPTSLGCFDREEEAARAYDRMM 167
            79****************555...54..*******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-6123167IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-10123168IPR016177DNA-binding domain
PROSITE profilePS5103210.81124164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-8124168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MFYKIIDDDL NDLTSLSFSE LRRKGLEFQP PAILARRSNS DTPKFHAPET CASILTCTIA  60
RTRKRIRISS WPRDSTYCKE NSNNLLSQKL SQKVRKVTNF GVRQSVHKVA RQKGISSGRT  120
YTSRYRGVHQ TFPTRRWEAQ FRRNGKPTSL GCFDREEEAA RAYDRMMVWC ELHVCENRVA  180
PKSGLKPGFA SLPLNFDCGE YENDYEGLRK MTQDELVQNL RRQGRLQATT NNFGG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003055907.11e-178predicted protein
TrEMBLC1MK011e-176C1MK01_MICPC; Predicted protein
STRINGXP_003055907.11e-177(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP27461414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.12e-09AP2 family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]