PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

55265

Common Name

MICPUN_55265

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 164aa MW: 18731.4 Da PI: 8.3742

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
55265	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	61.9	1.1e-19	111	153	8	50
RWP-RK 8 edlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 + + +yF+ +i AA +L+ c+T+LKriCR +G++RWP Rk++ 55265 111 DRITSYFHQSIDTAATNLNTCATMLKRICRLHGLHRWPGRKVS 153 5799*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.162	95	163	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-16	111	153	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MRATILGGVF ESIRPARKLL DWSEEAPRSW RRQDETATEQ SLHPFTYSCQ CFWAKITRWV 60 VEDSICICAY FFPSEYLVGR LNSRVYSLAT LQVLEEPTLL ASSENKPRGI DRITSYFHQS 120 IDTAATNLNT CATMLKRICR LHGLHRWPGR KVSTSQVTVL DSE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001574	0.0	CP001574.1 Micromonas sp. RCC299 chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002507626.1	1e-119	mid-like protein type b
TrEMBL	C1FE17	1e-118	C1FE17_MICCC; Mid-like protein type b
STRING	XP_002507626.1	1e-119	(Micromonas sp. RCC299)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	1e-10	Nin-like family protein

Link Out ? help Back to Top
Phytozome	55265
Entrez Gene	8250155

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]