PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 55664
Common NameMICPUCDRAFT_55664
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family CPP
Protein Properties Length: 256aa    MW: 28534.2 Da    PI: 9.5314
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
55664genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.75.3e-14542240
    TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
           +kk CnC++s+Clk+YCeCfa+g +C++ C+C +C+N+ 
  55664  5 RKKYCNCRNSRCLKLYCECFASGLHCDS-CNCVNCSNNL 42
           6899************************.********85 PP
2TCR52.11.3e-1683120138
    TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkN 38 
            ++++gC+Ckks+ClkkYCeCf+a+ +Cs+ C+C +CkN
  55664  83 RHNRGCHCKKSSCLKKYCECFQANIFCSDICRCMECKN 120
            5899*********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.8E-14444IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163432.1795123IPR005172CRC domain
PfamPF036386.9E-11741IPR005172CRC domain
SMARTSM011143.3E-1883124IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.0E-1386120IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MPSKRKKYCN CRNSRCLKLY CECFASGLHC DSCNCVNCSN NLASAAIRCT AVESTLERNP  60
NAFRPKIAPG VGPLEKRREG ASRHNRGCHC KKSSCLKKYC ECFQANIFCS DICRCMECKN  120
FLGSSQRVVA AKTLKVLSRT TAKGRLSAHA RRRKAVSEVS IEKAGSELLE VQEGFLPGDI  180
VCDRAVDKML ESLSFLQGCK KLEALGRETE IVQVHILNFQ YFSLTILSSS RSFSVVRKVI  240
HLRILSLWSG NHQRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-2831278127Protein lin-54 homolog
5fd3_B5e-2831278127Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00269DAPTransfer from AT2G20110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003056539.10.0tso1-like transcription factor
TrEMBLC1MLC30.0C1MLC3_MICPC; Tso1-like transcription factor
STRINGXP_003056539.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3231530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.12e-43Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]