PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

55695

Common Name

MICPUN_55695

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 126aa MW: 14354.3 Da PI: 10.0987

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
55695	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	62.2	1.3e-19	21	119	1	102
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHST..T--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFk..hsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 aFl++++ei++d+++++++sws++g++f+v+++ee+ k +Lpk+ ++ faSFv Ln+YgF + +++ + eF ++ F++g+ l++ 55695 21 AFLTRTHEIVSDPRTDHIVSWSKDGKTFIVWKPEELRK-LLPKTLGlfTQPFASFVMELNVYGFVHYGSGNAE----GDYFEFGQDGFQRGRPGLMH 112 69*********************************9.9964322789***********999998877....789************* PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i++k++ 55695 113 TIRQKEN 119 99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	4.3E-24	18	117	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.11E-19	18	116	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.5E-22	19	116	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.5E-18	22	117	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-7	22	45	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-7	74	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MASAQRAFTA QAFATLRPVP AFLTRTHEIV SDPRTDHIVS WSKDGKTFIV WKPEELRKLL 60 PKTLGLFTQP FASFVMELNV YGFVHYGSGN AEGDYFEFGQ DGFQRGRPGL MHTIRQKENF 120 GRYRH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001323	1e-171	CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002500299.1	5e-90	heat shock transcription factor
TrEMBL	C1DZ70	1e-88	C1DZ70_MICCC; Heat shock transcription factor
STRING	XP_002500299.1	2e-89	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP522	15	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-19	heat shock transcription factor A6B

Link Out ? help Back to Top
Phytozome	55695
Entrez Gene	8240999

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]